|
JDP2_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
JDP2 |
1 |
2337 |
25 |
229 |
6 |
|
TF group |
bZIP |
2 |
8 |
11 |
0 |
2337 |
|
Polypeptide used |
DBD |
3 |
0 |
33 |
2337 |
27 |
|
Ligand sequence |
TCCTTT20NTTC |
4 |
2337 |
18 |
0 |
7 |
|
Batch of SELEX experiment |
AC |
5 |
7 |
1278 |
1059 |
6 |
|
Seed sequence |
ATGASTCAT |
6 |
5 |
8 |
0 |
2337 |
|
Hamming distance of sequences to seed |
1 |
7 |
26 |
2337 |
61 |
0 |
|
SELEX cycle |
4 |
8 |
2337 |
6 |
0 |
5 |
|
Number of repeats |
dimeric |
9 |
16 |
424 |
37 |
2337 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
JDP2_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
JDP2 |
1 |
5158 |
5019 |
22406 |
4000 |
|
TF group |
bZIP |
2 |
36583 |
1153 |
1408 |
58 |
|
Polypeptide used |
DBD |
3 |
8 |
15 |
0 |
36583 |
|
Ligand sequence |
TCCTTT20NTTC |
4 |
7 |
3 |
36583 |
1723 |
|
Batch of SELEX experiment |
AC |
5 |
36583 |
7 |
16 |
7 |
|
Seed sequence |
NATGACGTCAYN |
6 |
18 |
36583 |
14 |
489 |
|
Hamming distance of sequences to seed |
1 |
7 |
679 |
3 |
36583 |
3 |
|
SELEX cycle |
4 |
8 |
20 |
11 |
7 |
36583 |
|
Number of repeats |
dimeric |
9 |
2592 |
36583 |
14 |
13 |
|
Comment |
|
10 |
36583 |
17 |
16 |
10 |
|
Representative matrix |
no |
11 |
59 |
14547 |
1102 |
22036 |
|
Source: |
|
12 |
5542 |
17766 |
6486 |
6789 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
JDP2_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
JDP2 |
1 |
1634 |
19 |
140 |
8 |
|
TF group |
bZIP |
2 |
5 |
6 |
1 |
1634 |
|
Polypeptide used |
full |
3 |
0 |
3 |
1634 |
22 |
|
Ligand sequence |
TGTTCA20NGA |
4 |
1634 |
1 |
2 |
25 |
|
Batch of SELEX experiment |
AE |
5 |
14 |
1200 |
434 |
13 |
|
Seed sequence |
ATGASTCAT |
6 |
6 |
0 |
6 |
1634 |
|
Hamming distance of sequences to seed |
1 |
7 |
22 |
1634 |
3 |
9 |
|
SELEX cycle |
3 |
8 |
1634 |
0 |
0 |
7 |
|
Number of repeats |
dimeric |
9 |
22 |
404 |
5 |
1634 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
JDP2_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
JDP2 |
1 |
4260 |
5483 |
11036 |
3623 |
|
TF group |
bZIP |
2 |
24403 |
1319 |
1403 |
17 |
|
Polypeptide used |
full |
3 |
3 |
9 |
3 |
24403 |
|
Ligand sequence |
TGTTCA20NGA |
4 |
11 |
0 |
24403 |
1939 |
|
Batch of SELEX experiment |
AE |
5 |
24403 |
7 |
6 |
6 |
|
Seed sequence |
NATGACGTCAYN |
6 |
5 |
24403 |
6 |
338 |
|
Hamming distance of sequences to seed |
1 |
7 |
587 |
5 |
24403 |
2 |
|
SELEX cycle |
3 |
8 |
15 |
24 |
7 |
24403 |
|
Number of repeats |
dimeric |
9 |
1777 |
24403 |
4 |
1 |
|
Comment |
|
10 |
24403 |
10 |
9 |
0 |
|
Representative
matrix |
no |
11 |
47 |
12119 |
835 |
12283 |
|
Source: |
|
12 |
4383 |
12117 |
4124 |
3778 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Jdp2_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Jdp2 |
1 |
336 |
2 |
15 |
0 |
|
TF group |
bZIP |
2 |
0 |
0 |
0 |
336 |
|
Polypeptide used |
DBD |
3 |
1 |
0 |
336 |
2 |
|
Ligand sequence |
TATCTG20NCG |
4 |
336 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
233 |
103 |
1 |
|
Seed sequence |
ATGASTCAT |
6 |
0 |
0 |
0 |
336 |
|
Hamming distance of sequences to seed |
1 |
7 |
1 |
336 |
0 |
0 |
|
SELEX cycle |
3 |
8 |
336 |
0 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
2 |
34 |
5 |
336 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Jdp2_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Jdp2 |
1 |
925 |
882 |
1975 |
382 |
|
TF group |
bZIP |
2 |
4164 |
120 |
199 |
5 |
|
Polypeptide used |
DBD |
3 |
1 |
2 |
0 |
4164 |
|
Ligand sequence |
TATCTG20NCG |
4 |
0 |
1 |
4164 |
162 |
|
Batch of SELEX experiment |
Z |
5 |
4164 |
1 |
0 |
1 |
|
Seed sequence |
NATGACGTCAYN |
6 |
1 |
4164 |
0 |
48 |
|
Hamming distance of sequences to seed |
1 |
7 |
60 |
2 |
4164 |
0 |
|
SELEX cycle |
3 |
8 |
1 |
3 |
2 |
4164 |
|
Number of repeats |
dimeric |
9 |
159 |
4164 |
0 |
1 |
|
Comment |
|
10 |
4164 |
1 |
1 |
0 |
|
Representative
matrix |
no |
11 |
3 |
1722 |
146 |
2442 |
|
Source: |
|
12 |
871 |
1918 |
608 |
767 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |