JDP2_1

 

 

 

 

A

C

G

T

 

Name

JDP2

1

2337

25

229

6

 

TF group

bZIP

2

8

11

0

2337

 

Polypeptide used

DBD

3

0

33

2337

27

 

Ligand sequence

TCCTTT20NTTC

4

2337

18

0

7

 

Batch of SELEX experiment

AC

5

7

1278

1059

6

 

Seed sequence

ATGASTCAT

6

5

8

0

2337

 

Hamming distance of sequences to seed

1

7

26

2337

61

0

 

SELEX cycle

4

8

2337

6

0

5

 

Number of repeats

dimeric

9

16

424

37

2337

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

JDP2_2

 

 

 

 

A

C

G

T

 

Name

JDP2

1

5158

5019

22406

4000

 

TF group

bZIP

2

36583

1153

1408

58

 

Polypeptide used

DBD

3

8

15

0

36583

 

Ligand sequence

TCCTTT20NTTC

4

7

3

36583

1723

 

Batch of SELEX experiment

AC

5

36583

7

16

7

 

Seed sequence

NATGACGTCAYN

6

18

36583

14

489

 

Hamming distance of sequences to seed

1

7

679

3

36583

3

 

SELEX cycle

4

8

20

11

7

36583

 

Number of repeats

dimeric

9

2592

36583

14

13

 

Comment

 

10

36583

17

16

10

 

Representative matrix

no

11

59

14547

1102

22036

 

Source:

 

12

5542

17766

6486

6789

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

JDP2_3

 

 

 

 

A

C

G

T

 

Name

JDP2

1

1634

19

140

8

 

TF group

bZIP

2

5

6

1

1634

 

Polypeptide used

full

3

0

3

1634

22

 

Ligand sequence

TGTTCA20NGA

4

1634

1

2

25

 

Batch of SELEX experiment

AE

5

14

1200

434

13

 

Seed sequence

ATGASTCAT

6

6

0

6

1634

 

Hamming distance of sequences to seed

1

7

22

1634

3

9

 

SELEX cycle

3

8

1634

0

0

7

 

Number of repeats

dimeric

9

22

404

5

1634

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

JDP2_4

 

 

 

 

A

C

G

T

 

Name

JDP2

1

4260

5483

11036

3623

 

TF group

bZIP

2

24403

1319

1403

17

 

Polypeptide used

full

3

3

9

3

24403

 

Ligand sequence

TGTTCA20NGA

4

11

0

24403

1939

 

Batch of SELEX experiment

AE

5

24403

7

6

6

 

Seed sequence

NATGACGTCAYN

6

5

24403

6

338

 

Hamming distance of sequences to seed

1

7

587

5

24403

2

 

SELEX cycle

3

8

15

24

7

24403

 

Number of repeats

dimeric

9

1777

24403

4

1

 

Comment

 

10

24403

10

9

0

 

Representative matrix

no

11

47

12119

835

12283

 

Source:

 

12

4383

12117

4124

3778

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Jdp2_5

 

 

 

 

A

C

G

T

 

Name

Jdp2

1

336

2

15

0

 

TF group

bZIP

2

0

0

0

336

 

Polypeptide used

DBD

3

1

0

336

2

 

Ligand sequence

TATCTG20NCG

4

336

0

0

0

 

Batch of SELEX experiment

Z

5

0

233

103

1

 

Seed sequence

ATGASTCAT

6

0

0

0

336

 

Hamming distance of sequences to seed

1

7

1

336

0

0

 

SELEX cycle

3

8

336

0

0

0

 

Number of repeats

dimeric

9

2

34

5

336

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Jdp2_6

 

 

 

 

A

C

G

T

 

Name

Jdp2

1

925

882

1975

382

 

TF group

bZIP

2

4164

120

199

5

 

Polypeptide used

DBD

3

1

2

0

4164

 

Ligand sequence

TATCTG20NCG

4

0

1

4164

162

 

Batch of SELEX experiment

Z

5

4164

1

0

1

 

Seed sequence

NATGACGTCAYN

6

1

4164

0

48

 

Hamming distance of sequences to seed

1

7

60

2

4164

0

 

SELEX cycle

3

8

1

3

2

4164

 

Number of repeats

dimeric

9

159

4164

0

1

 

Comment

 

10

4164

1

1

0

 

Representative matrix

no

11

3

1722

146

2442

 

Source:

 

12

871

1918

608

767

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764