|
Hoxd9_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxd9 |
1 |
67 |
202 |
148 |
30 |
|
TF group |
homeodomain |
2 |
77 |
202 |
0 |
54 |
|
Polypeptide used |
DBD |
3 |
100 |
202 |
6 |
0 |
|
Ligand sequence |
TCCTAA20NCG |
4 |
202 |
0 |
53 |
27 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
14 |
0 |
202 |
|
Seed sequence |
CCCATAAAN |
6 |
202 |
30 |
0 |
113 |
|
Hamming distance of sequences to seed |
1 |
7 |
202 |
35 |
0 |
11 |
|
SELEX cycle |
4 |
8 |
202 |
11 |
0 |
35 |
|
Number of repeats |
monomeric |
9 |
135 |
29 |
31 |
7 |
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxd9_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxd9 |
1 |
75 |
44 |
194 |
9 |
|
TF group |
homeodomain |
2 |
24 |
275 |
12 |
194 |
|
Polypeptide used |
DBD |
3 |
194 |
77 |
36 |
0 |
|
Ligand sequence |
TCCTAA20NCG |
4 |
194 |
2 |
31 |
5 |
|
Batch of SELEX experiment |
Z |
5 |
13 |
7 |
7 |
194 |
|
Seed sequence |
GTAATWAAAN |
6 |
99 |
3 |
0 |
95 |
|
Hamming distance of sequences to seed |
1 |
7 |
194 |
2 |
0 |
17 |
|
SELEX cycle |
4 |
8 |
194 |
7 |
0 |
7 |
|
Number of repeats |
monomeric |
9 |
194 |
26 |
40 |
44 |
|
Comment |
|
10 |
83 |
28 |
19 |
65 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxd9_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxd9 |
1 |
92 |
111 |
170 |
1 |
|
TF group |
homeodomain |
2 |
13 |
52 |
20 |
170 |
|
Polypeptide used |
DBD |
3 |
29 |
170 |
0 |
42 |
|
Ligand sequence |
TCCTAA20NCG |
4 |
70 |
7 |
170 |
11 |
|
Batch of SELEX experiment |
Z |
5 |
7 |
7 |
19 |
170 |
|
Seed sequence |
GTCGTAAAN |
6 |
170 |
0 |
0 |
58 |
|
Hamming distance of sequences to seed |
1 |
7 |
170 |
4 |
3 |
10 |
|
SELEX cycle |
4 |
8 |
170 |
7 |
0 |
0 |
|
Number of repeats |
monomeric |
9 |
95 |
28 |
21 |
26 |
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |