|
Hoxa11_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxa11 |
1 |
178 |
108 |
307 |
111 |
|
TF group |
homeodomain |
2 |
296 |
255 |
704 |
3 |
|
Polypeptide used |
DBD |
3 |
1 |
28 |
16 |
704 |
|
Ligand sequence |
TCCCCT20NCG |
4 |
30 |
704 |
0 |
36 |
|
Batch of SELEX experiment |
Z |
5 |
250 |
2 |
704 |
7 |
|
Seed sequence |
NGTCGTWAAANN |
6 |
14 |
1 |
3 |
704 |
|
Hamming distance of sequences to seed |
1 |
7 |
489 |
3 |
13 |
215 |
|
SELEX cycle |
4 |
8 |
704 |
0 |
2 |
31 |
|
Number of repeats |
monomeric |
9 |
704 |
27 |
3 |
40 |
|
Comment |
|
10 |
704 |
159 |
117 |
197 |
|
Representative matrix |
no |
11 |
179 |
164 |
150 |
211 |
|
Source: |
|
12 |
139 |
110 |
112 |
343 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxa11_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxa11 |
1 |
102 |
75 |
160 |
67 |
|
TF group |
homeodomain |
2 |
156 |
210 |
404 |
128 |
|
Polypeptide used |
DBD |
3 |
0 |
213 |
4 |
190 |
|
Ligand sequence |
TCCCCT20NCG |
4 |
404 |
417 |
75 |
30 |
|
Batch of SELEX experiment |
Z |
5 |
404 |
93 |
61 |
1 |
|
Seed sequence |
NGYAATWAAAN |
6 |
30 |
0 |
0 |
404 |
|
Hamming distance of sequences to seed |
1 |
7 |
246 |
14 |
4 |
157 |
|
SELEX cycle |
4 |
8 |
404 |
0 |
0 |
23 |
|
Number of repeats |
monomeric |
9 |
404 |
31 |
4 |
1 |
|
Comment |
|
10 |
404 |
137 |
76 |
93 |
|
Representative
matrix |
no |
11 |
114 |
102 |
72 |
116 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |