|
Hic1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hic1 |
1 |
1126 |
155 |
1647 |
140 |
|
TF group |
C2H2 |
2 |
1 |
12 |
14 |
3293 |
|
Polypeptide used |
DBD |
3 |
134 |
7 |
3160 |
2 |
|
Ligand sequence |
TCATCA20NCTA |
4 |
0 |
2889 |
29 |
1 |
|
Batch of SELEX experiment |
Z |
5 |
6 |
2835 |
1 |
1 |
|
Seed sequence |
RTGCCANCYNRTGCCMNC |
6 |
2332 |
290 |
9 |
109 |
|
Hamming distance of sequences to seed |
2 |
7 |
952 |
767 |
1140 |
107 |
|
SELEX cycle |
4 |
8 |
53 |
2770 |
100 |
116 |
|
Number of repeats |
dimeric |
9 |
194 |
1851 |
247 |
878 |
|
Comment |
|
10 |
185 |
965 |
591 |
1364 |
|
Representative matrix |
yes |
11 |
1609 |
35 |
1210 |
55 |
|
|
|
12 |
0 |
12 |
5 |
3342 |
|
|
|
13 |
137 |
12 |
3180 |
1 |
|
|
|
14 |
0 |
2887 |
49 |
6 |
|
|
|
15 |
2 |
2845 |
40 |
1 |
|
|
|
16 |
2022 |
524 |
9 |
70 |
|
Source: |
|
17 |
1251 |
602 |
694 |
336 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
89 |
2612 |
80 |
219 |
|
|
|
|
|
|
|
|
|
|
|
|
Hic1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hic1 |
1 |
6337 |
719 |
4670 |
666 |
|
TF group |
C2H2 |
2 |
62 |
422 |
73 |
11007 |
|
Polypeptide used |
DBD |
3 |
950 |
588 |
11007 |
183 |
|
Ligand sequence |
TCATCA20NCTA |
4 |
50 |
11007 |
121 |
0 |
|
Batch of SELEX experiment |
Z |
5 |
88 |
11007 |
31 |
68 |
|
Seed sequence |
RTGCCMNCN |
6 |
9008 |
1999 |
3 |
317 |
|
Hamming distance of sequences to seed |
1 |
7 |
6140 |
1986 |
2267 |
614 |
|
SELEX cycle |
4 |
8 |
1220 |
11007 |
1629 |
1488 |
|
Number of repeats |
monomer |
9 |
1610 |
4822 |
1884 |
2692 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |