|
HSFY2_dd1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HSFY2 |
1 |
102 |
40 |
32 |
266 |
|
TF group |
HSF |
2 |
58 |
7 |
15 |
266 |
|
Polypeptide used |
DBD |
3 |
42 |
266 |
26 |
2 |
|
Ligand sequence |
TCAGAG20NAGA |
4 |
1 |
25 |
266 |
50 |
|
Batch of SELEX experiment |
Y |
5 |
266 |
18 |
2 |
9 |
|
Seed sequence |
TTCGAANNNTTCGAA |
6 |
266 |
17 |
11 |
83 |
|
Hamming distance of sequences to seed |
1 |
7 |
92 |
80 |
35 |
59 |
|
SELEX cycle |
3 |
8 |
70 |
106 |
62 |
27 |
|
Number of repeats |
dimer of dimers |
9 |
106 |
32 |
112 |
15 |
|
Comment |
|
10 |
124 |
32 |
26 |
266 |
|
Representative matrix |
yes |
11 |
18 |
14 |
5 |
266 |
|
|
|
12 |
43 |
266 |
14 |
1 |
|
|
|
13 |
0 |
57 |
266 |
59 |
|
Source: |
|
14 |
266 |
25 |
8 |
18 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
266 |
36 |
29 |
88 |
|
|
|
|
|
|
|
|
|
|
|
|
HSFY2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HSFY2 |
1 |
1877 |
906 |
792 |
4071 |
|
TF group |
HSF |
2 |
2499 |
105 |
593 |
5948 |
|
Polypeptide used |
DBD |
3 |
185 |
158 |
87 |
5948 |
|
Ligand sequence |
TCAGAG20NAGA |
4 |
1236 |
5948 |
794 |
13 |
|
Batch of SELEX experiment |
Y |
5 |
0 |
0 |
5948 |
27 |
|
Seed sequence |
WTTCGAAYG |
6 |
5948 |
7 |
7 |
57 |
|
Hamming distance of sequences to seed |
1 |
7 |
5948 |
35 |
184 |
192 |
|
SELEX cycle |
3 |
8 |
10 |
4409 |
95 |
1539 |
|
Number of repeats |
dimeric |
9 |
751 |
989 |
5948 |
774 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
HSFY2_dd2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HSFY2 |
1 |
359 |
208 |
266 |
1526 |
|
TF group |
HSF |
2 |
203 |
119 |
151 |
1624 |
|
Polypeptide used |
DBD |
3 |
224 |
1399 |
206 |
39 |
|
Ligand sequence |
TCAGAG20NAGA |
4 |
49 |
165 |
1526 |
208 |
|
Batch of SELEX experiment |
Y |
5 |
1027 |
60 |
54 |
68 |
|
Seed sequence |
TTCGAANNNTTCGAA |
6 |
969 |
137 |
115 |
329 |
|
Hamming distance of sequences to seed |
2 |
7 |
343 |
443 |
212 |
393 |
|
SELEX cycle |
3 |
8 |
181 |
575 |
523 |
183 |
|
Number of repeats |
dimer of dimers |
9 |
457 |
137 |
583 |
192 |
|
Comment |
|
10 |
305 |
192 |
88 |
1429 |
|
Representative matrix |
no |
11 |
84 |
48 |
58 |
1580 |
|
|
|
12 |
136 |
1391 |
102 |
17 |
|
|
|
13 |
11 |
251 |
1464 |
310 |
|
Source: |
|
14 |
1034 |
118 |
60 |
96 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
959 |
235 |
124 |
303 |
|
|
|