|
HOXD13_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXD13 |
1 |
50 |
688 |
294 |
55 |
|
TF group |
homeodomain |
2 |
12 |
403 |
4 |
285 |
|
Polypeptide used |
DBD |
3 |
688 |
347 |
0 |
94 |
|
Ligand sequence |
GTGCT14N |
4 |
688 |
0 |
27 |
29 |
|
Batch of SELEX experiment |
U |
5 |
0 |
1 |
0 |
688 |
|
Seed sequence |
CYAATAAAAN |
6 |
688 |
0 |
0 |
110 |
|
Hamming distance of sequences to seed |
1 |
7 |
688 |
3 |
0 |
4 |
|
SELEX cycle |
4 |
8 |
688 |
1 |
0 |
0 |
|
Number of repeats |
monomeric |
9 |
688 |
75 |
34 |
56 |
|
Comment |
|
10 |
243 |
207 |
73 |
165 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXD13_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXD13 |
1 |
52 |
194 |
493 |
160 |
|
TF group |
homeodomain |
2 |
29 |
899 |
69 |
0 |
|
Polypeptide used |
DBD |
3 |
6 |
2 |
8 |
899 |
|
Ligand sequence |
GTGCT14N |
4 |
24 |
899 |
1 |
110 |
|
Batch of SELEX experiment |
U |
5 |
196 |
0 |
899 |
0 |
|
Seed sequence |
NCTCGTAAAAN |
6 |
5 |
2 |
0 |
899 |
|
Hamming distance of sequences to seed |
1 |
7 |
899 |
1 |
8 |
89 |
|
SELEX cycle |
4 |
8 |
899 |
0 |
0 |
6 |
|
Number of repeats |
monomeric |
9 |
899 |
0 |
2 |
0 |
|
Comment |
|
10 |
899 |
144 |
45 |
108 |
|
Representative
matrix |
no |
11 |
265 |
292 |
62 |
280 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxd13_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxd13 |
1 |
304 |
2106 |
1227 |
241 |
|
TF group |
homeodomain |
2 |
170 |
2106 |
0 |
1676 |
|
Polypeptide used |
DBD |
3 |
2106 |
523 |
0 |
480 |
|
Ligand sequence |
TGATAA20NATA |
4 |
2106 |
0 |
6 |
100 |
|
Batch of SELEX experiment |
AC |
5 |
0 |
1 |
4 |
2106 |
|
Seed sequence |
CCAATAAAAN |
6 |
2106 |
12 |
55 |
278 |
|
Hamming distance of sequences to seed |
1 |
7 |
2106 |
0 |
0 |
42 |
|
SELEX cycle |
4 |
8 |
2106 |
52 |
2 |
22 |
|
Number of repeats |
monomeric |
9 |
2106 |
582 |
165 |
417 |
|
Comment |
|
10 |
730 |
640 |
183 |
554 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxd13_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxd13 |
1 |
681 |
845 |
1202 |
971 |
|
TF group |
homeodomain |
2 |
413 |
3699 |
858 |
91 |
|
Polypeptide used |
DBD |
3 |
106 |
574 |
55 |
3699 |
|
Ligand sequence |
TGATAA20NATA |
4 |
1702 |
3699 |
70 |
753 |
|
Batch of SELEX experiment |
AC |
5 |
1488 |
0 |
2211 |
26 |
|
Seed sequence |
NCTCRTAAAAN |
6 |
0 |
2 |
3 |
3699 |
|
Hamming distance of sequences to seed |
1 |
7 |
3699 |
13 |
28 |
959 |
|
SELEX cycle |
4 |
8 |
3699 |
5 |
0 |
83 |
|
Number of repeats |
monomeric |
9 |
3699 |
14 |
41 |
102 |
|
Comment |
|
10 |
3699 |
957 |
423 |
929 |
|
Representative
matrix |
no |
11 |
1038 |
1298 |
374 |
989 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |