|
HOXC13_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC13 |
1 |
84 |
635 |
189 |
52 |
|
TF group |
homeodomain |
2 |
46 |
635 |
22 |
318 |
|
Polypeptide used |
DBD |
3 |
635 |
148 |
1 |
132 |
|
Ligand sequence |
TCCCTC20NTCC |
4 |
635 |
0 |
4 |
19 |
|
Batch of SELEX experiment |
Y |
5 |
2 |
2 |
2 |
635 |
|
Seed sequence |
CCAATAAAAN |
6 |
635 |
0 |
5 |
75 |
|
Hamming distance of sequences to seed |
1 |
7 |
635 |
2 |
0 |
10 |
|
SELEX cycle |
3 |
8 |
635 |
8 |
0 |
7 |
|
Number of repeats |
monomeric |
9 |
635 |
51 |
41 |
68 |
|
Comment |
|
10 |
229 |
177 |
81 |
148 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXC13_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC13 |
1 |
165 |
288 |
495 |
309 |
|
TF group |
homeodomain |
2 |
44 |
1257 |
58 |
13 |
|
Polypeptide used |
DBD |
3 |
4 |
21 |
5 |
1257 |
|
Ligand sequence |
TCCCTC20NTCC |
4 |
26 |
1257 |
10 |
132 |
|
Batch of SELEX experiment |
Y |
5 |
251 |
4 |
1257 |
4 |
|
Seed sequence |
NCTCGTAAAAN |
6 |
0 |
0 |
5 |
1257 |
|
Hamming distance of sequences to seed |
1 |
7 |
1257 |
1 |
2 |
165 |
|
SELEX cycle |
3 |
8 |
1257 |
4 |
2 |
8 |
|
Number of repeats |
monomeric |
9 |
1257 |
0 |
0 |
1 |
|
Comment |
|
10 |
1257 |
173 |
89 |
205 |
|
Representative
matrix |
yes |
11 |
389 |
358 |
147 |
362 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |