|
HOXC11_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC11 |
1 |
1604 |
635 |
1857 |
1028 |
|
TF group |
homeodomain |
2 |
2418 |
1073 |
5124 |
78 |
|
Polypeptide used |
DBD |
3 |
115 |
243 |
50 |
5124 |
|
Ligand sequence |
TCACTA20NTCA |
4 |
488 |
5124 |
36 |
564 |
|
Batch of SELEX experiment |
AC |
5 |
2514 |
31 |
5124 |
39 |
|
Seed sequence |
NGTCGTWAAAN |
6 |
12 |
13 |
0 |
5124 |
|
Hamming distance of sequences to seed |
1 |
7 |
3364 |
34 |
19 |
1760 |
|
SELEX cycle |
4 |
8 |
5124 |
8 |
27 |
282 |
|
Number of repeats |
monomeric |
9 |
5124 |
151 |
87 |
260 |
|
Comment |
|
10 |
5124 |
1033 |
732 |
1763 |
|
Representative matrix |
no |
11 |
1658 |
1074 |
674 |
1718 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXC11_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC11 |
1 |
2158 |
637 |
1710 |
1134 |
|
TF group |
homeodomain |
2 |
2499 |
1732 |
5639 |
971 |
|
Polypeptide used |
DBD |
3 |
197 |
2878 |
105 |
2761 |
|
Ligand sequence |
TCACTA20NTCA |
4 |
5639 |
3554 |
699 |
911 |
|
Batch of SELEX experiment |
AC |
5 |
5639 |
558 |
848 |
356 |
|
Seed sequence |
NGYAATWAAAN |
6 |
442 |
0 |
0 |
5639 |
|
Hamming distance of sequences to seed |
1 |
7 |
3953 |
72 |
113 |
1686 |
|
SELEX cycle |
4 |
8 |
5639 |
84 |
64 |
461 |
|
Number of repeats |
monomeric |
9 |
5639 |
344 |
92 |
282 |
|
Comment |
|
10 |
5639 |
1080 |
769 |
1486 |
|
Representative
matrix |
no |
11 |
2052 |
1299 |
831 |
1457 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXC11_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC11 |
1 |
683 |
260 |
1110 |
406 |
|
TF group |
homeodomain |
2 |
1040 |
479 |
2460 |
0 |
|
Polypeptide used |
full |
3 |
38 |
41 |
22 |
2460 |
|
Ligand sequence |
TGCGAA20NGA |
4 |
57 |
2460 |
12 |
98 |
|
Batch of SELEX experiment |
AF |
5 |
569 |
0 |
2460 |
0 |
|
Seed sequence |
NGTCGTWAAAN |
6 |
12 |
0 |
0 |
2460 |
|
Hamming distance of sequences to seed |
1 |
7 |
1784 |
6 |
25 |
676 |
|
SELEX cycle |
4 |
8 |
2460 |
0 |
0 |
42 |
|
Number of repeats |
monomeric |
9 |
2460 |
43 |
17 |
22 |
|
Comment |
|
10 |
2460 |
431 |
279 |
776 |
|
Representative matrix |
no |
11 |
707 |
628 |
384 |
741 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXC11_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC11 |
1 |
384 |
137 |
336 |
164 |
|
TF group |
homeodomain |
2 |
283 |
246 |
1021 |
81 |
|
Polypeptide used |
full |
3 |
18 |
620 |
32 |
401 |
|
Ligand sequence |
TGCGAA20NGA |
4 |
1021 |
947 |
169 |
70 |
|
Batch of SELEX experiment |
AF |
5 |
1021 |
11 |
111 |
86 |
|
Seed sequence |
NGYAATWAAAN |
6 |
81 |
0 |
28 |
1021 |
|
Hamming distance of sequences to seed |
1 |
7 |
803 |
58 |
13 |
219 |
|
SELEX cycle |
4 |
8 |
1021 |
0 |
5 |
86 |
|
Number of repeats |
monomeric |
9 |
1021 |
68 |
0 |
43 |
|
Comment |
|
10 |
1021 |
216 |
77 |
224 |
|
Representative
matrix |
no |
11 |
382 |
266 |
177 |
197 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |