|
HOXC10_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC10 |
1 |
1414 |
2362 |
1762 |
613 |
|
TF group |
homeodomain |
2 |
1133 |
2362 |
308 |
1142 |
|
Polypeptide used |
DBD |
3 |
1237 |
2362 |
89 |
507 |
|
Ligand sequence |
TGGACA20NGA |
4 |
2362 |
14 |
64 |
10 |
|
Batch of SELEX experiment |
Y |
5 |
74 |
18 |
0 |
2362 |
|
Seed sequence |
CCCATWAAAN |
6 |
1526 |
54 |
0 |
835 |
|
Hamming distance of sequences to seed |
1 |
7 |
2362 |
0 |
3 |
77 |
|
SELEX cycle |
3 |
8 |
2362 |
132 |
44 |
61 |
|
Number of repeats |
monomeric |
9 |
2362 |
551 |
237 |
447 |
|
Comment |
|
10 |
990 |
626 |
181 |
566 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXC10_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC10 |
1 |
1065 |
1329 |
3755 |
432 |
|
TF group |
homeodomain |
2 |
83 |
3545 |
22 |
3755 |
|
Polypeptide used |
DBD |
3 |
3755 |
2624 |
589 |
107 |
|
Ligand sequence |
TGGACA20NGA |
4 |
3755 |
284 |
317 |
51 |
|
Batch of SELEX experiment |
Y |
5 |
265 |
0 |
0 |
3755 |
|
Seed sequence |
GTAATWAAAN |
6 |
2423 |
45 |
68 |
1332 |
|
Hamming distance of sequences to seed |
1 |
7 |
3755 |
14 |
31 |
164 |
|
SELEX cycle |
3 |
8 |
3755 |
319 |
110 |
238 |
|
Number of repeats |
monomeric |
9 |
3755 |
856 |
846 |
932 |
|
Comment |
|
10 |
1444 |
798 |
549 |
964 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXC10_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXC10 |
1 |
1495 |
1044 |
3211 |
15 |
|
TF group |
homeodomain |
2 |
26 |
245 |
0 |
3211 |
|
Polypeptide used |
DBD |
3 |
315 |
3211 |
12 |
152 |
|
Ligand sequence |
TGGACA20NGA |
4 |
2638 |
6 |
3211 |
24 |
|
Batch of SELEX experiment |
Y |
5 |
27 |
0 |
0 |
3211 |
|
Seed sequence |
GTCGTWAAAN |
6 |
2165 |
5 |
4 |
1047 |
|
Hamming distance of sequences to seed |
1 |
7 |
3211 |
3 |
5 |
102 |
|
SELEX cycle |
3 |
8 |
3211 |
76 |
86 |
187 |
|
Number of repeats |
monomeric |
9 |
3211 |
551 |
532 |
1069 |
|
Comment |
|
10 |
988 |
679 |
453 |
1092 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxc10_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxc10 |
1 |
298 |
167 |
788 |
0 |
|
TF group |
homeodomain |
2 |
6 |
29 |
0 |
788 |
|
Polypeptide used |
DBD |
3 |
78 |
788 |
12 |
53 |
|
Ligand sequence |
TATAGA20NGAG |
4 |
791 |
0 |
788 |
0 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
0 |
1 |
788 |
|
Seed sequence |
GTCGTWAAAN |
6 |
576 |
10 |
4 |
212 |
|
Hamming distance of sequences to seed |
1 |
7 |
788 |
0 |
0 |
22 |
|
SELEX cycle |
4 |
8 |
788 |
27 |
0 |
23 |
|
Number of repeats |
monomeric |
9 |
788 |
100 |
60 |
157 |
|
Comment |
|
10 |
371 |
160 |
50 |
207 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxc10_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxc10 |
1 |
851 |
593 |
3470 |
333 |
|
TF group |
homeodomain |
2 |
66 |
1668 |
19 |
1802 |
|
Polypeptide used |
DBD |
3 |
3470 |
1190 |
360 |
248 |
|
Ligand sequence |
TATAGA20NGAG |
4 |
3470 |
106 |
93 |
25 |
|
Batch of SELEX experiment |
Z |
5 |
110 |
0 |
27 |
3470 |
|
Seed sequence |
GYAATWAAAN |
6 |
2602 |
11 |
45 |
868 |
|
Hamming distance of sequences to seed |
1 |
7 |
3470 |
0 |
0 |
40 |
|
SELEX cycle |
4 |
8 |
3470 |
47 |
57 |
116 |
|
Number of repeats |
monomeric |
9 |
3470 |
335 |
294 |
454 |
|
Comment |
|
10 |
1644 |
714 |
362 |
749 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |