|
HOXA2_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXA2 |
1 |
2196 |
2619 |
2370 |
1801 |
|
TF group |
homeodomain |
2 |
1574 |
3394 |
2663 |
1355 |
|
Polypeptide used |
DBD |
3 |
906 |
2764 |
513 |
6221 |
|
Ligand sequence |
TTATTA20NTA |
4 |
5858 |
3128 |
651 |
204 |
|
Batch of SELEX experiment |
AF |
5 |
8985 |
344 |
491 |
41 |
|
Seed sequence |
NNYMATTANN |
6 |
0 |
0 |
6 |
8985 |
|
Hamming distance of sequences to seed |
1 |
7 |
161 |
1247 |
0 |
8985 |
|
SELEX cycle |
3 |
8 |
8985 |
135 |
31 |
336 |
|
Number of repeats |
monomeric |
9 |
2188 |
2849 |
2840 |
1108 |
|
Comment |
|
10 |
1640 |
3786 |
2040 |
1520 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Hoxa2_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hoxa2 |
1 |
7453 |
5438 |
6024 |
4630 |
|
TF group |
homeodomain |
2 |
4303 |
8871 |
6774 |
3596 |
|
Polypeptide used |
DBD |
3 |
1652 |
5725 |
890 |
17820 |
|
Ligand sequence |
TACCGT20NCG |
4 |
16132 |
7413 |
1947 |
721 |
|
Batch of SELEX experiment |
Z |
5 |
23545 |
422 |
878 |
143 |
|
Seed sequence |
NNYMATTANN |
6 |
64 |
380 |
134 |
23545 |
|
Hamming distance of sequences to seed |
1 |
7 |
807 |
2134 |
33 |
23545 |
|
SELEX cycle |
3 |
8 |
23545 |
16 |
0 |
458 |
|
Number of repeats |
monomeric |
9 |
6230 |
6604 |
6894 |
3818 |
|
Comment |
|
10 |
5204 |
8830 |
4112 |
5398 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |