|
HOXA13_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXA13 |
1 |
108 |
516 |
175 |
90 |
|
TF group |
homeodomain |
2 |
46 |
516 |
11 |
154 |
|
Polypeptide used |
DBD |
3 |
516 |
259 |
13 |
146 |
|
Ligand sequence |
TTCTCT20NTA |
4 |
516 |
0 |
2 |
25 |
|
Batch of SELEX experiment |
AF |
5 |
0 |
19 |
0 |
516 |
|
Seed sequence |
CCAATAAAAN |
6 |
516 |
18 |
4 |
90 |
|
Hamming distance of sequences to seed |
1 |
7 |
516 |
5 |
9 |
30 |
|
SELEX cycle |
3 |
8 |
516 |
28 |
0 |
16 |
|
Number of repeats |
monomeric |
9 |
516 |
175 |
67 |
119 |
|
Comment |
|
10 |
163 |
190 |
43 |
121 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXA13_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXA13 |
1 |
114 |
286 |
311 |
166 |
|
TF group |
homeodomain |
2 |
31 |
878 |
79 |
12 |
|
Polypeptide used |
DBD |
3 |
6 |
39 |
26 |
878 |
|
Ligand sequence |
TTCTCT20NTA |
4 |
25 |
878 |
4 |
112 |
|
Batch of SELEX experiment |
AF |
5 |
223 |
11 |
878 |
0 |
|
Seed sequence |
NCTCGTAAAAN |
6 |
0 |
4 |
0 |
878 |
|
Hamming distance of sequences to seed |
1 |
7 |
878 |
9 |
3 |
189 |
|
SELEX cycle |
3 |
8 |
878 |
0 |
0 |
32 |
|
Number of repeats |
monomeric |
9 |
878 |
12 |
15 |
11 |
|
Comment |
|
10 |
878 |
230 |
92 |
249 |
|
Representative
matrix |
no |
11 |
280 |
287 |
116 |
195 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXA13_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXA13 |
1 |
62 |
247 |
71 |
4 |
|
TF group |
homeodomain |
2 |
1 |
247 |
8 |
125 |
|
Polypeptide used |
full |
3 |
247 |
70 |
9 |
43 |
|
Ligand sequence |
TGTGGA20NGGG |
4 |
247 |
0 |
0 |
31 |
|
Batch of SELEX experiment |
AE |
5 |
0 |
0 |
0 |
247 |
|
Seed sequence |
CCAATAAAAN |
6 |
247 |
9 |
5 |
15 |
|
Hamming distance of sequences to seed |
1 |
7 |
247 |
0 |
0 |
16 |
|
SELEX cycle |
4 |
8 |
247 |
3 |
0 |
0 |
|
Number of repeats |
monomeric |
9 |
247 |
60 |
44 |
34 |
|
Comment |
|
10 |
104 |
72 |
23 |
48 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXA13_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXA13 |
1 |
83 |
42 |
55 |
120 |
|
TF group |
homeodomain |
2 |
18 |
300 |
17 |
0 |
|
Polypeptide used |
full |
3 |
0 |
19 |
0 |
300 |
|
Ligand sequence |
TGTGGA20NGGG |
4 |
0 |
300 |
0 |
59 |
|
Batch of SELEX experiment |
AE |
5 |
48 |
6 |
300 |
5 |
|
Seed sequence |
NCTCGTAAAAN |
6 |
13 |
3 |
0 |
300 |
|
Hamming distance of sequences to seed |
1 |
7 |
300 |
1 |
0 |
21 |
|
SELEX cycle |
4 |
8 |
300 |
0 |
0 |
0 |
|
Number of repeats |
monomeric |
9 |
300 |
0 |
0 |
0 |
|
Comment |
|
10 |
300 |
10 |
31 |
58 |
|
Representative
matrix |
no |
11 |
124 |
78 |
32 |
66 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |