|
HNF4A_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF4A |
1 |
266 |
418 |
562 |
109 |
|
TF group |
nuclearreceptor |
2 |
752 |
39 |
602 |
16 |
|
Polypeptide used |
DBD |
3 |
20 |
2 |
1355 |
72 |
|
Ligand sequence |
TGACAG20NGA |
4 |
4 |
2 |
18 |
1355 |
|
Batch of SELEX experiment |
AF |
5 |
213 |
1355 |
399 |
171 |
|
Seed sequence |
NRGTCCAAAGTCCANY |
6 |
40 |
1355 |
6 |
95 |
|
Hamming distance of sequences to seed |
1 |
7 |
1355 |
0 |
42 |
6 |
|
SELEX cycle |
4 |
8 |
1355 |
0 |
14 |
16 |
|
Number of repeats |
dimeric |
9 |
1355 |
0 |
50 |
0 |
|
Comment |
|
10 |
0 |
0 |
1355 |
0 |
|
Representative matrix |
yes |
11 |
0 |
0 |
2 |
1355 |
|
|
|
12 |
85 |
1355 |
172 |
383 |
|
|
|
13 |
3 |
1355 |
0 |
42 |
|
|
|
14 |
1355 |
30 |
183 |
236 |
|
Source: |
|
15 |
449 |
204 |
64 |
637 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
53 |
934 |
0 |
421 |
|
|
|
|
|
|
|
|
|
|
|
|
HNF4A_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF4A |
1 |
508 |
165 |
1341 |
275 |
|
TF group |
nuclearreceptor |
2 |
662 |
28 |
1187 |
17 |
|
Polypeptide used |
DBD |
3 |
12 |
0 |
1850 |
1 |
|
Ligand sequence |
TGACAG20NGA |
4 |
135 |
29 |
1850 |
124 |
|
Batch of SELEX experiment |
AF |
5 |
12 |
25 |
619 |
1850 |
|
Seed sequence |
RRGGTCAAAGTCCRNN |
6 |
0 |
1850 |
8 |
196 |
|
Hamming distance of sequences to seed |
1 |
7 |
1850 |
5 |
85 |
0 |
|
SELEX cycle |
4 |
8 |
1850 |
0 |
46 |
29 |
|
Number of repeats |
dimeric |
9 |
1850 |
22 |
12 |
8 |
|
Comment |
|
10 |
0 |
2 |
1850 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
38 |
1850 |
|
|
|
12 |
69 |
1850 |
298 |
305 |
|
|
|
13 |
4 |
1850 |
10 |
132 |
|
|
|
14 |
1136 |
3 |
713 |
71 |
|
Source: |
|
15 |
0 |
582 |
429 |
839 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
263 |
442 |
327 |
818 |
|
|
|
|
|
|
|
|
|
|
|
|
HNF4A_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF4A |
1 |
7141 |
3937 |
9609 |
1599 |
|
TF group |
nuclearreceptor |
2 |
11090 |
167 |
11197 |
211 |
|
Polypeptide used |
full |
3 |
53 |
36 |
22287 |
291 |
|
Ligand sequence |
TCCGTG40NTGC |
4 |
149 |
24 |
831 |
22287 |
|
Batch of SELEX experiment |
AI |
5 |
6116 |
22287 |
2315 |
6075 |
|
Seed sequence |
NRGTCCAAAGTCCANY |
6 |
29 |
22287 |
37 |
505 |
|
Hamming distance of sequences to seed |
1 |
7 |
22287 |
20 |
437 |
17 |
|
SELEX cycle |
3 |
8 |
22287 |
8 |
37 |
35 |
|
Number of repeats |
dimeric |
9 |
22287 |
22 |
260 |
13 |
|
Comment |
|
10 |
14 |
28 |
22287 |
21 |
|
Representative matrix |
no |
11 |
35 |
34 |
83 |
22287 |
|
|
|
12 |
261 |
22287 |
155 |
2320 |
|
|
|
13 |
46 |
22287 |
55 |
321 |
|
|
|
14 |
22287 |
161 |
3576 |
276 |
|
Source: |
|
15 |
8646 |
5677 |
2739 |
5224 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
10239 |
10995 |
7586 |
11291 |
|
|
|
|
|
|
|
|
|
|
|
|
HNF4A_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF4A |
1 |
3446 |
1525 |
7715 |
629 |
|
TF group |
nuclearreceptor |
2 |
3332 |
52 |
7829 |
31 |
|
Polypeptide used |
full |
3 |
7 |
13 |
11161 |
17 |
|
Ligand sequence |
TCCGTG40NTGC |
4 |
420 |
51 |
11161 |
2416 |
|
Batch of SELEX experiment |
AI |
5 |
85 |
104 |
1377 |
11161 |
|
Seed sequence |
RRGGTCAAAGGTCA |
6 |
10 |
11161 |
9 |
90 |
|
Hamming distance of sequences to seed |
1 |
7 |
11161 |
10 |
54 |
6 |
|
SELEX cycle |
3 |
8 |
11161 |
19 |
14 |
19 |
|
Number of repeats |
dimeric |
9 |
11161 |
9 |
55 |
6 |
|
Comment |
|
10 |
1 |
20 |
11161 |
8 |
|
Representative matrix |
yes |
11 |
19 |
27 |
11161 |
4326 |
|
|
|
12 |
12 |
95 |
97 |
11161 |
|
Source: |
|
13 |
15 |
11161 |
19 |
121 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
11161 |
44 |
3016 |
22 |
|
|
|
|
|
|
|
|
|
|
|
|
HNF4A_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF4A |
1 |
14045 |
7433 |
22343 |
3351 |
|
TF group |
nuclearreceptor |
2 |
13892 |
428 |
22496 |
216 |
|
Polypeptide used |
full |
3 |
34 |
38 |
36388 |
45 |
|
Ligand sequence |
TCCGTG40NTGC |
4 |
3197 |
245 |
36388 |
9533 |
|
Batch of SELEX experiment |
AI |
5 |
869 |
1228 |
8136 |
36388 |
|
Seed sequence |
RRGGTCAAAGTCCRNN |
6 |
39 |
36388 |
55 |
807 |
|
Hamming distance of sequences to seed |
1 |
7 |
36388 |
26 |
556 |
16 |
|
SELEX cycle |
3 |
8 |
36388 |
33 |
79 |
67 |
|
Number of repeats |
dimeric |
9 |
36388 |
42 |
540 |
34 |
|
Comment |
|
10 |
40 |
43 |
36388 |
21 |
|
Representative matrix |
yes |
11 |
37 |
62 |
95 |
36388 |
|
|
|
12 |
494 |
36388 |
305 |
4452 |
|
|
|
13 |
50 |
36388 |
45 |
525 |
|
|
|
14 |
30205 |
181 |
6184 |
517 |
|
Source: |
|
15 |
12371 |
9751 |
4817 |
9450 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
8592 |
9136 |
7397 |
11263 |
|
|
|
|
|
|
|
|
|
|
|
|
HNF4A_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF4A |
1 |
1033 |
443 |
1785 |
157 |
|
TF group |
nuclearreceptor |
2 |
1251 |
9 |
1568 |
10 |
|
Polypeptide used |
full |
3 |
11 |
5 |
2818 |
22 |
|
Ligand sequence |
TCCGTG40NTGC |
4 |
20 |
14 |
52 |
2818 |
|
Batch of SELEX experiment |
AI |
5 |
670 |
2818 |
192 |
798 |
|
Seed sequence |
RRGTCCAAAGGTCAA |
6 |
13 |
2818 |
17 |
52 |
|
Hamming distance of sequences to seed |
1 |
7 |
2818 |
2 |
37 |
0 |
|
SELEX cycle |
3 |
8 |
2818 |
4 |
10 |
11 |
|
Number of repeats |
dimeric |
9 |
2818 |
5 |
21 |
9 |
|
Comment |
|
10 |
1 |
7 |
2818 |
12 |
|
Representative matrix |
no |
11 |
14 |
12 |
2818 |
1327 |
|
|
|
12 |
10 |
60 |
50 |
2818 |
|
|
|
13 |
5 |
2818 |
8 |
48 |
|
Source: |
|
14 |
2818 |
9 |
635 |
6 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
2818 |
2302 |
919 |
2089 |
|
|
|
|
|
|
|
|
|
|
|
|
Hnf4a_7 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Hnf4a |
1 |
1870 |
587 |
3292 |
467 |
|
TF group |
nuclearreceptor |
2 |
1624 |
23 |
3538 |
5 |
|
Polypeptide used |
DBD |
3 |
6 |
0 |
5162 |
1 |
|
Ligand sequence |
TCCACG20NCG |
4 |
211 |
14 |
5162 |
711 |
|
Batch of SELEX experiment |
Z |
5 |
148 |
66 |
564 |
5162 |
|
Seed sequence |
RRGGTCAAAGTCCRNN |
6 |
1 |
5162 |
5 |
122 |
|
Hamming distance of sequences to seed |
1 |
7 |
5162 |
2 |
159 |
0 |
|
SELEX cycle |
4 |
8 |
5162 |
0 |
69 |
11 |
|
Number of repeats |
dimeric |
9 |
5162 |
0 |
52 |
0 |
|
Comment |
|
10 |
0 |
1 |
5162 |
3 |
|
Representative
matrix |
no |
11 |
0 |
5 |
7 |
5162 |
|
|
|
12 |
129 |
5162 |
131 |
962 |
|
|
|
13 |
0 |
5162 |
4 |
191 |
|
|
|
14 |
4452 |
35 |
709 |
135 |
|
Source: |
|
15 |
2148 |
1109 |
1121 |
784 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
1019 |
1064 |
906 |
2174 |
|
|
|