|
HNF1B_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF1B |
1 |
1528 |
1030 |
30839 |
1628 |
|
TF group |
homeodomain |
2 |
541 |
2552 |
1434 |
30839 |
|
Polypeptide used |
full |
3 |
5730 |
3466 |
778 |
30839 |
|
Ligand sequence |
TCGACT20NCAT |
4 |
30839 |
13 |
398 |
49 |
|
Batch of SELEX experiment |
W |
5 |
30839 |
1163 |
140 |
612 |
|
Seed sequence |
GTTAATNATTAAY |
6 |
1944 |
809 |
66 |
30839 |
|
Hamming distance of sequences to seed |
1 |
7 |
6502 |
9236 |
9626 |
5474 |
|
SELEX cycle |
2 |
8 |
30839 |
73 |
600 |
1047 |
|
Number of repeats |
dimeric |
9 |
1323 |
416 |
1589 |
30839 |
|
Comment |
|
10 |
80 |
665 |
1 |
30839 |
|
Representative
matrix |
no |
11 |
30839 |
794 |
5271 |
3119 |
|
|
|
12 |
30839 |
1472 |
1980 |
406 |
|
Source: |
|
13 |
1790 |
17114 |
725 |
13724 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
15 |
|
|
|
|
|
|
|
16 |
|
|
|
|
|
|
|
17 |
|
|
|
|
|
|
|
18 |
|
|
|
|
|
|
|
19 |
|
|
|
|
|
|
|
20 |
|
|
|
|
|
|
|
21 |
|
|
|
|
|
|
|
22 |
|
|
|
|
|
|
|
23 |
|
|
|
|
|
|
|
|
HNF1B_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HNF1B |
1 |
8805 |
4400 |
5808 |
4797 |
|
TF group |
homeodomain |
2 |
10423 |
667 |
13387 |
912 |
|
Polypeptide
used |
full |
3 |
544 |
2027 |
1262 |
23811 |
|
Ligand
sequence |
TCGACT20NCAT |
4 |
4263 |
4321 |
771 |
23811 |
|
Batch of
SELEX experiment |
W |
5 |
23811 |
12 |
352 |
42 |
|
Seed
sequence |
NRTTAATNATTAACN |
6 |
23811 |
1052 |
255 |
505 |
|
Hamming
distance of sequences to seed |
1 |
7 |
1699 |
767 |
78 |
23811 |
|
SELEX
cycle |
2 |
8 |
5518 |
7147 |
7277 |
3869 |
|
Number of
repeats |
dimeric |
9 |
23811 |
43 |
428 |
728 |
|
Comment |
|
10 |
1079 |
248 |
1198 |
23811 |
|
Representative
matrix |
no |
11 |
57 |
473 |
4 |
23811 |
|
|
|
12 |
23811 |
418 |
1994 |
2299 |
|
|
|
13 |
23811 |
1026 |
1371 |
183 |
|
Source: |
|
14 |
1756 |
23811 |
762 |
1187 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
6236 |
6753 |
3737 |
7084 |
|
|
|