HINFP1_m1

 

 

 

 

A

C

G

T

 

Name

HINFP1

1

23

340

106

100

 

TF group

C2H2

2

285

131

113

53

 

Polypeptide used

full

3

276

45

217

17

 

Ligand sequence

TCAAGG20NGAA

4

1

388

97

7

 

Batch of SELEX experiment

W

5

0

14

484

10

 

Seed sequence

CAACGTCCGCNN

6

0

0

0

470

 

Hamming distance of sequences to seed

2

7

0

404

13

0

 

SELEX cycle

3

8

0

413

0

3

 

Number of repeats

monomeric

9

0

31

472

21

 

Comment

 

10

1

395

15

12

 

Representative matrix

yes

11

85

55

188

97

 

Source:

 

12

77

84

154

107

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HINFP1_d1

 

 

 

 

A

C

G

T

 

Name

HINFP1

1

54

2

2995

22

 

TF group

C2H2

2

0

2068

0

0

 

Polypeptide used

full

3

0

0

2000

0

 

Ligand sequence

TCAAGG20NGAA

4

0

0

2601

8

 

Batch of SELEX experiment

W

5

1875

1

0

5

 

Seed sequence

GCGGACSNNNNNNSGTCCGC

6

0

1968

2

0

 

Hamming distance of sequences to seed

2

7

0

293

2261

11

 

SELEX cycle

4

8

13

723

321

1361

 

Number of repeats

dimeric

9

179

804

296

1162

 

Comment

 

10

231

620

1502

23

 

Representative matrix

yes

11

21

1524

109

525

 

 

 

12

1389

28

425

75

 

 

 

13

1069

324

595

14

 

 

 

14

0

1657

318

0

 

 

 

15

0

0

2116

2

 

 

 

16

8

1

5

2272

 

 

 

17

0

1703

0

0

 

 

 

18

2

1798

0

0

 

Source:

 

19

0

4

2032

2

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

20

3

1789

13

17

 

 

 

 

 

 

 

 

 

 

 

 

HINFP1_d2

 

 

 

 

A

C

G

T

 

Name

HINFP1

1

133

34

2939

0

 

TF group

C2H2

2

6

2779

0

3

 

Polypeptide used

full

3

0

0

3293

0

 

Ligand sequence

TCAAGG20NGAA

4

1

17

3783

23

 

Batch of SELEX experiment

W

5

2541

14

0

0

 

Seed sequence

GCGGACSNNSNNSGTCCGC

6

0

2634

2

2

 

Hamming distance of sequences to seed

2

7

0

934

2369

3

 

SELEX cycle

4

8

103

758

670

1851

 

Number of repeats

dimeric

9

130

503

816

2031

 

Comment

 

10

30

1528

1438

95

 

Representative matrix

yes

11

1483

498

464

230

 

 

 

12

1459

277

931

41

 

 

 

13

6

2182

533

0

 

 

 

14

0

0

2938

0

 

 

 

15

0

8

24

3192

 

 

 

16

4

2415

0

0

 

 

 

17

0

2373

0

2

 

Source:

 

18

1

2

2926

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

10

2558

34

3