|
HINFP1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HINFP1 |
1 |
23 |
340 |
106 |
100 |
|
TF group |
C2H2 |
2 |
285 |
131 |
113 |
53 |
|
Polypeptide used |
full |
3 |
276 |
45 |
217 |
17 |
|
Ligand sequence |
TCAAGG20NGAA |
4 |
1 |
388 |
97 |
7 |
|
Batch of SELEX experiment |
W |
5 |
0 |
14 |
484 |
10 |
|
Seed sequence |
CAACGTCCGCNN |
6 |
0 |
0 |
0 |
470 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
404 |
13 |
0 |
|
SELEX cycle |
3 |
8 |
0 |
413 |
0 |
3 |
|
Number of repeats |
monomeric |
9 |
0 |
31 |
472 |
21 |
|
Comment |
|
10 |
1 |
395 |
15 |
12 |
|
Representative matrix |
yes |
11 |
85 |
55 |
188 |
97 |
|
Source: |
|
12 |
77 |
84 |
154 |
107 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HINFP1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HINFP1 |
1 |
54 |
2 |
2995 |
22 |
|
TF group |
C2H2 |
2 |
0 |
2068 |
0 |
0 |
|
Polypeptide used |
full |
3 |
0 |
0 |
2000 |
0 |
|
Ligand sequence |
TCAAGG20NGAA |
4 |
0 |
0 |
2601 |
8 |
|
Batch of SELEX experiment |
W |
5 |
1875 |
1 |
0 |
5 |
|
Seed sequence |
GCGGACSNNNNNNSGTCCGC |
6 |
0 |
1968 |
2 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
293 |
2261 |
11 |
|
SELEX cycle |
4 |
8 |
13 |
723 |
321 |
1361 |
|
Number of repeats |
dimeric |
9 |
179 |
804 |
296 |
1162 |
|
Comment |
|
10 |
231 |
620 |
1502 |
23 |
|
Representative matrix |
yes |
11 |
21 |
1524 |
109 |
525 |
|
|
|
12 |
1389 |
28 |
425 |
75 |
|
|
|
13 |
1069 |
324 |
595 |
14 |
|
|
|
14 |
0 |
1657 |
318 |
0 |
|
|
|
15 |
0 |
0 |
2116 |
2 |
|
|
|
16 |
8 |
1 |
5 |
2272 |
|
|
|
17 |
0 |
1703 |
0 |
0 |
|
|
|
18 |
2 |
1798 |
0 |
0 |
|
Source: |
|
19 |
0 |
4 |
2032 |
2 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
20 |
3 |
1789 |
13 |
17 |
|
|
|
|
|
|
|
|
|
|
|
|
HINFP1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HINFP1 |
1 |
133 |
34 |
2939 |
0 |
|
TF group |
C2H2 |
2 |
6 |
2779 |
0 |
3 |
|
Polypeptide used |
full |
3 |
0 |
0 |
3293 |
0 |
|
Ligand sequence |
TCAAGG20NGAA |
4 |
1 |
17 |
3783 |
23 |
|
Batch of SELEX experiment |
W |
5 |
2541 |
14 |
0 |
0 |
|
Seed sequence |
GCGGACSNNSNNSGTCCGC |
6 |
0 |
2634 |
2 |
2 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
934 |
2369 |
3 |
|
SELEX cycle |
4 |
8 |
103 |
758 |
670 |
1851 |
|
Number of repeats |
dimeric |
9 |
130 |
503 |
816 |
2031 |
|
Comment |
|
10 |
30 |
1528 |
1438 |
95 |
|
Representative matrix |
yes |
11 |
1483 |
498 |
464 |
230 |
|
|
|
12 |
1459 |
277 |
931 |
41 |
|
|
|
13 |
6 |
2182 |
533 |
0 |
|
|
|
14 |
0 |
0 |
2938 |
0 |
|
|
|
15 |
0 |
8 |
24 |
3192 |
|
|
|
16 |
4 |
2415 |
0 |
0 |
|
|
|
17 |
0 |
2373 |
0 |
2 |
|
Source: |
|
18 |
1 |
2 |
2926 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
10 |
2558 |
34 |
3 |
|
|
|