|
HESX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HESX1 |
1 |
831 |
753 |
1743 |
744 |
|
TF group |
homeodomain |
2 |
879 |
1432 |
447 |
1313 |
|
Polypeptide used |
DBD |
3 |
187 |
0 |
34 |
4072 |
|
Ligand sequence |
TCTTCT20NCTG |
4 |
4072 |
0 |
53 |
31 |
|
Batch of SELEX experiment |
Z |
5 |
4072 |
7 |
9 |
0 |
|
Seed sequence |
NNTAATTRNN |
6 |
0 |
0 |
15 |
4072 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
15 |
0 |
4072 |
|
SELEX cycle |
3 |
8 |
1892 |
38 |
2180 |
97 |
|
Number of repeats |
monomeric |
9 |
1245 |
772 |
1681 |
373 |
|
Comment |
|
10 |
801 |
1601 |
461 |
1209 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HESX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HESX1 |
1 |
255 |
472 |
183 |
460 |
|
TF group |
homeodomain |
2 |
21 |
28 |
11 |
1242 |
|
Polypeptide used |
DBD |
3 |
1185 |
1 |
18 |
37 |
|
Ligand sequence |
TCTTCT20NCTG |
4 |
1176 |
1 |
6 |
3 |
|
Batch of SELEX experiment |
Z |
5 |
11 |
4 |
14 |
1247 |
|
Seed sequence |
NTAATTRGYAATTAN |
6 |
22 |
17 |
22 |
1225 |
|
Hamming distance of sequences to seed |
2 |
7 |
420 |
2 |
1014 |
8 |
|
SELEX cycle |
3 |
8 |
182 |
0 |
1301 |
129 |
|
Number of repeats |
dimeric |
9 |
15 |
872 |
15 |
552 |
|
Comment |
|
10 |
1167 |
46 |
33 |
53 |
|
Representative
matrix |
no |
11 |
1200 |
40 |
31 |
21 |
|
|
|
12 |
20 |
27 |
7 |
1222 |
|
|
|
13 |
87 |
41 |
7 |
1218 |
|
Source: |
|
14 |
1186 |
2 |
24 |
32 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
471 |
99 |
416 |
311 |
|
|
|