|
GMEB2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GMEB2 |
1 |
1790 |
2710 |
1021 |
7714 |
|
TF group |
SAND |
2 |
1289 |
2894 |
3133 |
7714 |
|
Polypeptide used |
DBD |
3 |
7714 |
91 |
249 |
77 |
|
Ligand sequence |
TGGATG20NGA |
4 |
8 |
7714 |
0 |
22 |
|
Batch of SELEX experiment |
O |
5 |
33 |
19 |
7714 |
18 |
|
Seed sequence |
TTACGYAM |
6 |
76 |
3252 |
72 |
4461 |
|
Hamming distance of sequences to seed |
1 |
7 |
7714 |
794 |
1136 |
1242 |
|
SELEX cycle |
3 |
8 |
3463 |
4250 |
854 |
914 |
|
Number of repeats |
dimeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
GMEB2_dd1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GMEB2 |
1 |
551 |
7 |
85 |
490 |
|
TF group |
SAND |
2 |
716 |
0 |
325 |
1 |
|
Polypeptide used |
DBD |
3 |
3 |
1042 |
1 |
0 |
|
Ligand sequence |
TGGATG20NGA |
4 |
1 |
0 |
1042 |
1 |
|
Batch of SELEX experiment |
O |
5 |
0 |
33 |
0 |
1042 |
|
Seed sequence |
WRCGTAACCACGYN |
6 |
1042 |
26 |
356 |
1 |
|
Hamming distance of sequences to seed |
1 |
7 |
1042 |
53 |
5 |
22 |
|
SELEX cycle |
4 |
8 |
166 |
1042 |
351 |
49 |
|
Number of repeats |
dimer of dimers |
9 |
15 |
1042 |
11 |
139 |
|
Comment |
|
10 |
1042 |
4 |
31 |
2 |
|
Representative matrix |
yes |
11 |
0 |
1042 |
0 |
0 |
|
|
|
12 |
0 |
57 |
1042 |
1 |
|
Source: |
|
13 |
1 |
176 |
1 |
866 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
698 |
0 |
4 |
339 |
|
|
|
|
|
|
|
|
|
|
|
|
GMEB2_dd2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GMEB2 |
1 |
415 |
1372 |
511 |
2903 |
|
TF group |
SAND |
2 |
4457 |
73 |
456 |
60 |
|
Polypeptide used |
DBD |
3 |
8 |
4661 |
9 |
6 |
|
Ligand sequence |
TGGATG20NGA |
4 |
3 |
28 |
4663 |
100 |
|
Batch of SELEX experiment |
O |
5 |
553 |
530 |
24 |
4190 |
|
Seed sequence |
YACGTAACNKACGTA |
6 |
4337 |
293 |
412 |
383 |
|
Hamming distance of sequences to seed |
3 |
7 |
4100 |
870 |
504 |
117 |
|
SELEX cycle |
4 |
8 |
697 |
3781 |
587 |
580 |
|
Number of repeats |
dimer of dimers |
9 |
301 |
954 |
1028 |
2388 |
|
Comment |
|
10 |
122 |
1368 |
2123 |
1512 |
|
Representative matrix |
yes |
11 |
4375 |
56 |
552 |
121 |
|
|
|
12 |
41 |
4637 |
192 |
13 |
|
|
|
13 |
16 |
52 |
4670 |
102 |
|
Source: |
|
14 |
163 |
1540 |
123 |
3504 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
4570 |
353 |
359 |
166 |
|
|
|
|
|
|
|
|
|
|
|
|
GMEB2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GMEB2 |
1 |
34 |
75 |
109 |
239 |
|
TF group |
SAND |
2 |
25 |
10 |
86 |
239 |
|
Polypeptide used |
DBD |
3 |
239 |
0 |
5 |
0 |
|
Ligand sequence |
TCGCGC20NGA |
4 |
4 |
239 |
0 |
0 |
|
Batch of SELEX experiment |
Y |
5 |
0 |
4 |
239 |
0 |
|
Seed sequence |
TTACGTAA |
6 |
0 |
21 |
0 |
239 |
|
Hamming distance of sequences to seed |
1 |
7 |
239 |
66 |
12 |
9 |
|
SELEX cycle |
4 |
8 |
239 |
84 |
24 |
5 |
|
Number of repeats |
dimeric |
|
|
|
|
|
|
Comment |
replicate
experiment (mammalian expression) |
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |