|
GCM1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GCM1 |
1 |
322 |
879 |
623 |
766 |
|
TF group |
GCM |
2 |
2590 |
99 |
413 |
57 |
|
Polypeptide used |
DBD |
3 |
6 |
3 |
11 |
2590 |
|
Ligand sequence |
TGAGCA20NCGA |
4 |
442 |
26 |
2590 |
2 |
|
Batch of SELEX experiment |
Y |
5 |
107 |
2590 |
127 |
100 |
|
Seed sequence |
NATGCGGGTA |
6 |
94 |
4 |
2590 |
478 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
2590 |
1 |
|
SELEX cycle |
4 |
8 |
2 |
1 |
2590 |
0 |
|
Number of repeats |
monomeric |
9 |
30 |
491 |
15 |
2590 |
|
Comment |
|
10 |
2590 |
492 |
915 |
568 |
|
Representative
matrix |
yes |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
GCM1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GCM1 |
1 |
1748 |
319 |
693 |
99 |
|
TF group |
GCM |
2 |
97 |
401 |
112 |
3033 |
|
Polypeptide used |
full |
3 |
1386 |
97 |
1572 |
20 |
|
Ligand sequence |
TCCAGT20NGAC |
4 |
479 |
2161 |
150 |
639 |
|
Batch of SELEX experiment |
AE |
5 |
328 |
40 |
2172 |
1512 |
|
Seed sequence |
ATGCGGGYRCCCGCAT |
6 |
8 |
6 |
2684 |
42 |
|
Hamming distance of sequences to seed |
2 |
7 |
2 |
19 |
2676 |
4 |
|
SELEX cycle |
4 |
8 |
1 |
703 |
54 |
2013 |
|
Number of repeats |
dimeric |
9 |
1364 |
12 |
955 |
8 |
|
Comment |
|
10 |
29 |
2162 |
34 |
4 |
|
Representative matrix |
yes |
11 |
10 |
2133 |
20 |
13 |
|
|
|
12 |
1417 |
2000 |
39 |
477 |
|
|
|
13 |
164 |
154 |
2699 |
701 |
|
|
|
14 |
37 |
2202 |
93 |
864 |
|
Source: |
|
15 |
2072 |
311 |
49 |
243 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
1036 |
1222 |
1051 |
2423 |
|
|
|
|
|
|
|
|
|
|
|
|
GCM1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GCM1 |
1 |
2522 |
8553 |
5154 |
5210 |
|
TF group |
GCM |
2 |
21439 |
1811 |
4010 |
261 |
|
Polypeptide used |
full |
3 |
161 |
154 |
96 |
21439 |
|
Ligand sequence |
TCCAGT20NGAC |
4 |
4371 |
274 |
21439 |
15 |
|
Batch of SELEX experiment |
AE |
5 |
1002 |
21439 |
572 |
880 |
|
Seed sequence |
NATGCGGGTAN |
6 |
594 |
255 |
21439 |
3815 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
4 |
21439 |
35 |
|
SELEX cycle |
4 |
8 |
0 |
18 |
21439 |
10 |
|
Number of repeats |
monomeric |
9 |
146 |
4992 |
147 |
21439 |
|
Comment |
|
10 |
21439 |
2905 |
7971 |
2014 |
|
Representative
matrix |
no |
11 |
789 |
13412 |
4829 |
2409 |
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |