|
GBX2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GBX2 |
1 |
10334 |
5147 |
8145 |
3740 |
|
TF group |
homeodomain |
2 |
3761 |
10517 |
8429 |
4658 |
|
Polypeptide used |
DBD |
3 |
699 |
15511 |
106 |
11855 |
|
Ligand sequence |
TCCCGA20NGCC |
4 |
27366 |
570 |
1113 |
227 |
|
Batch of SELEX experiment |
Y |
5 |
27366 |
250 |
114 |
25 |
|
Seed sequence |
NNYAATTANN |
6 |
0 |
61 |
65 |
27366 |
|
Hamming distance of sequences to seed |
1 |
7 |
318 |
570 |
673 |
27366 |
|
SELEX cycle |
3 |
8 |
27366 |
73 |
30 |
650 |
|
Number of repeats |
monomeric |
9 |
8236 |
4502 |
10638 |
3991 |
|
Comment |
|
10 |
5389 |
9159 |
7075 |
5743 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
GBX2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GBX2 |
1 |
225 |
584 |
37 |
5645 |
|
TF group |
homeodomain |
2 |
4062 |
110 |
234 |
1771 |
|
Polypeptide used |
DBD |
3 |
4146 |
90 |
261 |
101 |
|
Ligand sequence |
TCCCGA20NGCC |
4 |
415 |
443 |
862 |
5871 |
|
Batch of SELEX experiment |
Y |
5 |
549 |
263 |
645 |
5723 |
|
Seed sequence |
TAATTRNNYAATTA |
6 |
1178 |
112 |
4797 |
108 |
|
Hamming distance of sequences to seed |
2 |
7 |
1395 |
1302 |
2737 |
350 |
|
SELEX cycle |
3 |
8 |
390 |
2943 |
1604 |
1239 |
|
Number of repeats |
dimeric |
9 |
200 |
4747 |
268 |
1462 |
|
Comment |
|
10 |
4154 |
456 |
402 |
418 |
|
Representative
matrix |
no |
11 |
4245 |
598 |
454 |
304 |
|
|
|
12 |
142 |
355 |
121 |
5780 |
|
Source: |
|
13 |
1244 |
138 |
141 |
5484 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
4309 |
23 |
307 |
223 |
|
|
|
|
|
|
|
|
|
|
|
|
GBX2_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GBX2 |
1 |
921 |
786 |
766 |
531 |
|
TF group |
homeodomain |
2 |
574 |
1218 |
707 |
505 |
|
Polypeptide used |
full |
3 |
194 |
1893 |
93 |
1110 |
|
Ligand sequence |
TGATTT20NGA |
4 |
3003 |
435 |
311 |
165 |
|
Batch of SELEX experiment |
AE |
5 |
3003 |
212 |
57 |
144 |
|
Seed sequence |
NNYAATTANN |
6 |
68 |
0 |
26 |
3003 |
|
Hamming distance of sequences to seed |
1 |
7 |
158 |
345 |
222 |
3003 |
|
SELEX cycle |
2 |
8 |
3003 |
77 |
88 |
272 |
|
Number of repeats |
monomeric |
9 |
870 |
727 |
928 |
478 |
|
Comment |
|
10 |
610 |
1147 |
683 |
563 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Gbx2_m3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Gbx2 |
1 |
1996 |
837 |
1247 |
697 |
|
TF group |
homeodomain |
2 |
761 |
1793 |
1392 |
830 |
|
Polypeptide used |
DBD |
3 |
219 |
2701 |
61 |
2076 |
|
Ligand sequence |
TACACC20NCAC |
4 |
4776 |
328 |
233 |
67 |
|
Batch of SELEX experiment |
Z |
5 |
4776 |
175 |
0 |
131 |
|
Seed sequence |
NNYAATTANN |
6 |
0 |
0 |
0 |
4776 |
|
Hamming distance of sequences to seed |
1 |
7 |
101 |
178 |
155 |
4776 |
|
SELEX cycle |
3 |
8 |
4776 |
39 |
4 |
185 |
|
Number of repeats |
monomeric |
9 |
1426 |
913 |
1679 |
759 |
|
Comment |
|
10 |
914 |
1440 |
1261 |
1161 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |