|
FOXO6_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO6 |
1 |
274 |
7 |
1281 |
18 |
|
TF group |
forkhead |
2 |
65 |
48 |
34 |
1402 |
|
Polypeptide used |
DBD |
3 |
770 |
141 |
10 |
35 |
|
Ligand sequence |
TCGTGT30NGTT |
4 |
819 |
42 |
9 |
26 |
|
Batch of SELEX experiment |
AH |
5 |
810 |
0 |
23 |
10 |
|
Seed sequence |
GTAAACATGTTTAC |
6 |
3 |
996 |
1 |
33 |
|
Hamming distance of sequences to seed |
2 |
7 |
808 |
6 |
11 |
41 |
|
SELEX cycle |
4 |
8 |
6 |
2 |
0 |
1380 |
|
Number of repeats |
dimeric |
9 |
37 |
3 |
1523 |
3 |
|
Comment |
|
10 |
0 |
0 |
2 |
1419 |
|
Representative
matrix |
no |
11 |
16 |
15 |
34 |
1398 |
|
|
|
12 |
23 |
4 |
397 |
1315 |
|
Source: |
|
13 |
785 |
0 |
44 |
70 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
0 |
869 |
20 |
270 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXO6_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO6 |
1 |
1445 |
0 |
7025 |
0 |
|
TF group |
forkhead |
2 |
154 |
0 |
32 |
7025 |
|
Polypeptide used |
DBD |
3 |
7025 |
1147 |
7 |
0 |
|
Ligand sequence |
TCGTGT30NGTT |
4 |
7025 |
195 |
0 |
26 |
|
Batch of SELEX experiment |
AH |
5 |
7025 |
0 |
0 |
0 |
|
Seed sequence |
GTAAACA |
6 |
0 |
7025 |
31 |
385 |
|
Hamming distance of sequences to seed |
1 |
7 |
7025 |
0 |
13 |
0 |
|
SELEX cycle |
3 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXO6_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO6 |
1 |
150 |
123 |
185 |
1069 |
|
TF group |
forkhead |
2 |
158 |
57 |
52 |
1262 |
|
Polypeptide used |
DBD |
3 |
22 |
32 |
36 |
1353 |
|
Ligand sequence |
TCGTGT30NGTT |
4 |
2 |
947 |
3 |
13 |
|
Batch of SELEX experiment |
AH |
5 |
0 |
975 |
4 |
6 |
|
Seed sequence |
TTTCCCCACACRAC |
6 |
4 |
975 |
4 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
6 |
985 |
3 |
17 |
|
SELEX cycle |
4 |
8 |
807 |
1 |
0 |
2 |
|
Number of repeats |
putatively multimeric |
9 |
0 |
980 |
1 |
1 |
|
Comment |
|
10 |
808 |
4 |
9 |
0 |
|
Representative
matrix |
no |
11 |
52 |
932 |
14 |
17 |
|
|
|
12 |
172 |
52 |
1076 |
56 |
|
Source: |
|
13 |
708 |
225 |
74 |
130 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
96 |
877 |
131 |
81 |
|
|
|