|
FOXO4_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO4 |
1 |
312 |
8 |
1486 |
0 |
|
TF group |
forkhead |
2 |
167 |
22 |
44 |
1246 |
|
Polypeptide used |
DBD |
3 |
738 |
428 |
4 |
1 |
|
Ligand sequence |
TGACTC20NGA |
4 |
971 |
4 |
0 |
1 |
|
Batch of SELEX experiment |
AC |
5 |
974 |
0 |
2 |
0 |
|
Seed sequence |
GTAAACATGTTTAC |
6 |
0 |
829 |
0 |
32 |
|
Hamming distance of sequences to seed |
2 |
7 |
975 |
0 |
4 |
40 |
|
SELEX cycle |
3 |
8 |
30 |
4 |
2 |
1254 |
|
Number of repeats |
dimeric |
9 |
40 |
0 |
1707 |
0 |
|
Comment |
|
10 |
3 |
2 |
2 |
1272 |
|
Representative
matrix |
no |
11 |
2 |
8 |
17 |
1275 |
|
|
|
12 |
10 |
0 |
425 |
1142 |
|
Source: |
|
13 |
950 |
15 |
28 |
37 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
1 |
837 |
6 |
132 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXO4_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO4 |
1 |
1669 |
13 |
5378 |
0 |
|
TF group |
forkhead |
2 |
345 |
69 |
123 |
5378 |
|
Polypeptide used |
DBD |
3 |
5378 |
1259 |
32 |
20 |
|
Ligand sequence |
TGACTC20NGA |
4 |
5378 |
146 |
19 |
20 |
|
Batch of SELEX experiment |
AC |
5 |
5378 |
0 |
90 |
10 |
|
Seed sequence |
GTAAACA |
6 |
58 |
5378 |
33 |
958 |
|
Hamming distance of sequences to seed |
1 |
7 |
5378 |
10 |
10 |
40 |
|
SELEX cycle |
3 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXO4_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO4 |
1 |
158 |
64 |
93 |
416 |
|
TF group |
forkhead |
2 |
117 |
39 |
43 |
471 |
|
Polypeptide used |
DBD |
3 |
20 |
40 |
56 |
503 |
|
Ligand sequence |
TGACTC20NGA |
4 |
29 |
309 |
12 |
11 |
|
Batch of SELEX experiment |
AC |
5 |
22 |
311 |
7 |
12 |
|
Seed sequence |
TTTCCCCACACG |
6 |
4 |
311 |
6 |
3 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
312 |
13 |
15 |
|
SELEX cycle |
3 |
8 |
381 |
11 |
9 |
0 |
|
Number of repeats |
putatively multimeric |
9 |
0 |
311 |
3 |
15 |
|
Comment |
|
10 |
381 |
13 |
28 |
15 |
|
Representative
matrix |
no |
11 |
66 |
291 |
24 |
42 |
|
Source: |
|
12 |
144 |
112 |
527 |
64 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |