|
FOXO3_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO3 |
1 |
116 |
0 |
1178 |
0 |
|
TF group |
forkhead |
2 |
11 |
5 |
4 |
1092 |
|
Polypeptide used |
full |
3 |
680 |
78 |
0 |
2 |
|
Ligand sequence |
TGTTGC20NGTG |
4 |
739 |
1 |
0 |
0 |
|
Batch of SELEX experiment |
W |
5 |
751 |
3 |
0 |
0 |
|
Seed sequence |
GTAAACATGTTTAC |
6 |
0 |
801 |
0 |
3 |
|
Hamming distance of sequences to seed |
2 |
7 |
759 |
0 |
0 |
6 |
|
SELEX cycle |
4 |
8 |
2 |
0 |
0 |
1079 |
|
Number of repeats |
dimeric |
9 |
3 |
0 |
1238 |
0 |
|
Comment |
|
10 |
0 |
0 |
0 |
1156 |
|
Representative
matrix |
no |
11 |
0 |
0 |
0 |
1079 |
|
|
|
12 |
3 |
1 |
168 |
988 |
|
Source: |
|
13 |
736 |
0 |
2 |
7 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
1 |
768 |
0 |
64 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXO3_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO3 |
1 |
21 |
0 |
532 |
0 |
|
TF group |
forkhead |
2 |
0 |
0 |
13 |
532 |
|
Polypeptide used |
full |
3 |
532 |
16 |
5 |
1 |
|
Ligand sequence |
TGTTGC20NGTG |
4 |
532 |
1 |
0 |
0 |
|
Batch of SELEX experiment |
W |
5 |
532 |
10 |
0 |
0 |
|
Seed sequence |
GTAAACAW |
6 |
15 |
532 |
0 |
3 |
|
Hamming distance of sequences to seed |
1 |
7 |
532 |
11 |
0 |
0 |
|
SELEX cycle |
4 |
8 |
317 |
12 |
36 |
215 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXO3_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO3 |
1 |
12 |
24 |
36 |
137 |
|
TF group |
forkhead |
2 |
9 |
15 |
11 |
180 |
|
Polypeptide used |
full |
3 |
0 |
0 |
0 |
198 |
|
Ligand sequence |
TGTTGC20NGTG |
4 |
9 |
113 |
5 |
3 |
|
Batch of SELEX experiment |
W |
5 |
0 |
111 |
3 |
1 |
|
Seed sequence |
TTTCCCCACAC |
6 |
0 |
111 |
4 |
9 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
109 |
3 |
0 |
|
SELEX cycle |
4 |
8 |
96 |
0 |
1 |
0 |
|
Number of repeats |
putatively multimeric |
9 |
3 |
112 |
0 |
0 |
|
Comment |
|
10 |
95 |
17 |
1 |
7 |
|
Representative
matrix |
no |
11 |
14 |
99 |
10 |
9 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |