|
FOXO1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO1 |
1 |
551 |
51 |
1281 |
22 |
|
TF group |
forkhead |
2 |
155 |
35 |
26 |
1281 |
|
Polypeptide used |
DBD |
3 |
1281 |
196 |
13 |
4 |
|
Ligand sequence |
TTCAGC20NTA |
4 |
1281 |
120 |
2 |
4 |
|
Batch of SELEX experiment |
AF |
5 |
1281 |
0 |
34 |
0 |
|
Seed sequence |
GTAAACAA |
6 |
0 |
1281 |
11 |
96 |
|
Hamming distance of sequences to seed |
1 |
7 |
1281 |
16 |
2 |
9 |
|
SELEX cycle |
3 |
8 |
1281 |
271 |
201 |
772 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXO1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO1 |
1 |
155 |
11 |
338 |
1 |
|
TF group |
forkhead |
2 |
44 |
5 |
3 |
404 |
|
Polypeptide used |
DBD |
3 |
283 |
56 |
0 |
0 |
|
Ligand sequence |
TTCAGC20NTA |
4 |
303 |
8 |
0 |
1 |
|
Batch of SELEX experiment |
AF |
5 |
312 |
1 |
0 |
1 |
|
Seed sequence |
GTAAACATGTTTAC |
6 |
0 |
269 |
1 |
16 |
|
Hamming distance of sequences to seed |
2 |
7 |
311 |
1 |
2 |
4 |
|
SELEX cycle |
3 |
8 |
3 |
1 |
0 |
428 |
|
Number of repeats |
dimeric |
9 |
18 |
0 |
535 |
1 |
|
Comment |
|
10 |
0 |
0 |
0 |
426 |
|
Representative matrix |
yes |
11 |
1 |
1 |
7 |
426 |
|
|
|
12 |
0 |
0 |
61 |
416 |
|
Source: |
|
13 |
310 |
5 |
12 |
12 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
2 |
279 |
0 |
35 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXO1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXO1 |
1 |
112 |
101 |
138 |
685 |
|
TF group |
forkhead |
2 |
117 |
38 |
36 |
742 |
|
Polypeptide used |
DBD |
3 |
30 |
62 |
40 |
763 |
|
Ligand sequence |
TTCAGC20NTA |
4 |
8 |
482 |
6 |
20 |
|
Batch of SELEX experiment |
AF |
5 |
11 |
484 |
3 |
11 |
|
Seed sequence |
TTTCCCCACACG |
6 |
0 |
486 |
3 |
4 |
|
Hamming distance of sequences to seed |
2 |
7 |
8 |
487 |
6 |
9 |
|
SELEX cycle |
3 |
8 |
557 |
8 |
6 |
9 |
|
Number of repeats |
putatively multimeric |
9 |
2 |
491 |
0 |
1 |
|
Comment |
|
10 |
554 |
24 |
5 |
0 |
|
Representative matrix |
yes |
11 |
48 |
479 |
42 |
51 |
|
Source: |
|
12 |
237 |
140 |
646 |
156 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |