|
FOXJ3_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXJ3 |
1 |
521 |
0 |
628 |
0 |
|
TF group |
forkhead |
2 |
211 |
80 |
189 |
1149 |
|
Polypeptide used |
DBD |
3 |
1149 |
45 |
39 |
29 |
|
Ligand sequence |
TAGTGG20NGTT |
4 |
1149 |
12 |
27 |
58 |
|
Batch of SELEX experiment |
AC |
5 |
1149 |
0 |
59 |
68 |
|
Seed sequence |
RTAAACAA |
6 |
488 |
1149 |
300 |
147 |
|
Hamming distance of sequences to seed |
1 |
7 |
1149 |
0 |
7 |
0 |
|
SELEX cycle |
4 |
8 |
1149 |
148 |
123 |
208 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXJ3_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXJ3 |
1 |
84 |
4 |
467 |
0 |
|
TF group |
forkhead |
2 |
27 |
7 |
1 |
581 |
|
Polypeptide used |
DBD |
3 |
376 |
35 |
7 |
25 |
|
Ligand sequence |
TAGTGG20NGTT |
4 |
396 |
5 |
5 |
2 |
|
Batch of SELEX experiment |
AC |
5 |
398 |
0 |
0 |
17 |
|
Seed sequence |
RTAAACARTAAACA |
6 |
15 |
518 |
9 |
60 |
|
Hamming distance of sequences to seed |
2 |
7 |
395 |
8 |
0 |
5 |
|
SELEX cycle |
4 |
8 |
292 |
0 |
164 |
0 |
|
Number of repeats |
dimeric |
9 |
23 |
0 |
0 |
579 |
|
Comment |
|
10 |
335 |
107 |
19 |
9 |
|
Representative matrix |
no |
11 |
393 |
16 |
1 |
0 |
|
|
|
12 |
399 |
12 |
0 |
9 |
|
Source: |
|
13 |
10 |
544 |
0 |
8 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
404 |
9 |
0 |
5 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXJ3_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXJ3 |
1 |
130 |
1 |
454 |
1 |
|
TF group |
forkhead |
2 |
26 |
56 |
20 |
598 |
|
Polypeptide used |
DBD |
3 |
411 |
2 |
3 |
25 |
|
Ligand sequence |
TAGTGG20NGTT |
4 |
416 |
0 |
9 |
30 |
|
Batch of SELEX experiment |
AC |
5 |
418 |
12 |
0 |
6 |
|
Seed sequence |
RTAAACATAAACA |
6 |
5 |
519 |
8 |
117 |
|
Hamming distance of sequences to seed |
2 |
7 |
413 |
0 |
0 |
11 |
|
SELEX cycle |
4 |
8 |
118 |
21 |
21 |
563 |
|
Number of repeats |
dimeric |
9 |
385 |
96 |
10 |
17 |
|
Comment |
|
10 |
413 |
39 |
9 |
1 |
|
Representative matrix |
no |
11 |
413 |
3 |
33 |
0 |
|
|
|
12 |
7 |
570 |
19 |
25 |
|
Source: |
|
13 |
417 |
0 |
14 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxj3_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxj3 |
1 |
782 |
29 |
156 |
33 |
|
TF group |
forkhead |
2 |
88 |
782 |
9 |
29 |
|
Polypeptide used |
DBD |
3 |
18 |
1 |
782 |
0 |
|
Ligand sequence |
TAAACA20NCAA |
4 |
1 |
0 |
782 |
29 |
|
Batch of SELEX experiment |
AF |
5 |
782 |
0 |
2 |
10 |
|
Seed sequence |
ACGGACACAAT |
6 |
2 |
782 |
4 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
782 |
0 |
0 |
2 |
|
SELEX cycle |
4 |
8 |
0 |
782 |
0 |
0 |
|
Number of repeats |
putatively multimeric |
9 |
782 |
0 |
0 |
14 |
|
Comment |
|
10 |
782 |
1 |
0 |
32 |
|
Representative matrix |
no |
11 |
20 |
3 |
11 |
782 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxj3_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxj3 |
1 |
1048 |
505 |
4066 |
121 |
|
TF group |
forkhead |
2 |
567 |
585 |
243 |
5649 |
|
Polypeptide used |
DBD |
3 |
3504 |
505 |
138 |
181 |
|
Ligand sequence |
TAAACA20NCAA |
4 |
3581 |
167 |
94 |
99 |
|
Batch of SELEX experiment |
AF |
5 |
3556 |
65 |
104 |
56 |
|
Seed sequence |
RTAAACAATAAACA |
6 |
175 |
5079 |
179 |
422 |
|
Hamming distance of sequences to seed |
2 |
7 |
3541 |
79 |
112 |
40 |
|
SELEX cycle |
4 |
8 |
2933 |
87 |
2155 |
99 |
|
Number of repeats |
dimeric |
9 |
1175 |
560 |
187 |
5423 |
|
Comment |
|
10 |
3240 |
1524 |
396 |
323 |
|
Representative
matrix |
no |
11 |
3550 |
294 |
125 |
105 |
|
|
|
12 |
3620 |
382 |
134 |
278 |
|
Source: |
|
13 |
480 |
5098 |
195 |
432 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
3659 |
21 |
145 |
156 |
|
|
|
|
|
|
|
|
|
|
|
|
Foxj3_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxj3 |
1 |
2778 |
124 |
3487 |
23 |
|
TF group |
forkhead |
2 |
429 |
708 |
200 |
6265 |
|
Polypeptide used |
DBD |
3 |
6265 |
674 |
52 |
5 |
|
Ligand sequence |
TAAACA20NCAA |
4 |
6265 |
317 |
31 |
34 |
|
Batch of SELEX experiment |
AF |
5 |
6265 |
42 |
23 |
52 |
|
Seed sequence |
RTAAACAA |
6 |
0 |
6265 |
1 |
638 |
|
Hamming distance of sequences to seed |
1 |
7 |
6265 |
32 |
38 |
0 |
|
SELEX cycle |
3 |
8 |
6265 |
1195 |
1124 |
1784 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxj3_d4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxj3 |
1 |
655 |
44 |
1383 |
18 |
|
TF group |
forkhead |
2 |
287 |
346 |
52 |
2039 |
|
Polypeptide used |
DBD |
3 |
2039 |
119 |
27 |
18 |
|
Ligand sequence |
TAAACA20NCAA |
4 |
2039 |
34 |
10 |
8 |
|
Batch of SELEX experiment |
AF |
5 |
2039 |
0 |
29 |
5 |
|
Seed sequence |
RTAAACATMAACA |
6 |
32 |
2039 |
6 |
251 |
|
Hamming distance of sequences to seed |
1 |
7 |
2039 |
0 |
180 |
0 |
|
SELEX cycle |
4 |
8 |
1752 |
127 |
53 |
2039 |
|
Number of repeats |
dimeric |
9 |
1868 |
171 |
8 |
10 |
|
Comment |
|
10 |
2039 |
42 |
7 |
34 |
|
Representative
matrix |
no |
11 |
2039 |
13 |
33 |
8 |
|
|
|
12 |
145 |
2039 |
4 |
257 |
|
Source: |
|
13 |
2039 |
0 |
30 |
17 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |