|
FOXJ2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXJ2 |
1 |
1450 |
154 |
5450 |
16 |
|
TF group |
forkhead |
2 |
447 |
200 |
61 |
6373 |
|
Polypeptide used |
DBD |
3 |
4130 |
557 |
3 |
117 |
|
Ligand sequence |
TGACGA20NGA |
4 |
4328 |
52 |
6 |
67 |
|
Batch of SELEX experiment |
W |
5 |
4383 |
16 |
8 |
18 |
|
Seed sequence |
RTAAACAATAAAYA |
6 |
28 |
4041 |
4 |
519 |
|
Hamming distance of sequences to seed |
2 |
7 |
4410 |
4 |
8 |
14 |
|
SELEX cycle |
3 |
8 |
3690 |
31 |
1926 |
25 |
|
Number of repeats |
dimeric |
9 |
1228 |
164 |
40 |
6354 |
|
Comment |
|
10 |
3649 |
1806 |
87 |
250 |
|
Representative matrix |
yes |
11 |
4377 |
149 |
56 |
43 |
|
|
|
12 |
4435 |
356 |
73 |
107 |
|
Source: |
|
13 |
411 |
3979 |
20 |
299 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
4512 |
25 |
68 |
46 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXJ2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXJ2 |
1 |
615 |
52 |
825 |
16 |
|
TF group |
forkhead |
2 |
113 |
251 |
21 |
1440 |
|
Polypeptide used |
DBD |
3 |
1440 |
256 |
19 |
8 |
|
Ligand sequence |
TGACGA20NGA |
4 |
1440 |
90 |
0 |
17 |
|
Batch of SELEX experiment |
W |
5 |
1440 |
0 |
2 |
28 |
|
Seed sequence |
RTAAACAA |
6 |
20 |
1440 |
2 |
124 |
|
Hamming distance of sequences to seed |
1 |
7 |
1440 |
0 |
13 |
0 |
|
SELEX cycle |
2 |
8 |
1440 |
424 |
200 |
430 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXJ2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXJ2 |
1 |
3291 |
277 |
12429 |
60 |
|
TF group |
forkhead |
2 |
725 |
897 |
125 |
14145 |
|
Polypeptide used |
DBD |
3 |
9548 |
530 |
46 |
681 |
|
Ligand sequence |
TGACGA20NGA |
4 |
9788 |
217 |
131 |
578 |
|
Batch of SELEX experiment |
W |
5 |
9848 |
88 |
57 |
105 |
|
Seed sequence |
RTAAACAWMAACA |
6 |
145 |
8538 |
56 |
1656 |
|
Hamming distance of sequences to seed |
2 |
7 |
9888 |
26 |
327 |
9 |
|
SELEX cycle |
3 |
8 |
4312 |
238 |
135 |
7924 |
|
Number of repeats |
dimeric |
9 |
6039 |
2998 |
98 |
1395 |
|
Comment |
|
10 |
9568 |
789 |
219 |
1336 |
|
Representative matrix |
yes |
11 |
9926 |
328 |
363 |
130 |
|
|
|
12 |
1388 |
8951 |
181 |
1143 |
|
Source: |
|
13 |
10064 |
241 |
356 |
246 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |