|
FOXG1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXG1 |
1 |
233 |
0 |
169 |
2 |
|
TF group |
forkhead |
2 |
3 |
9 |
0 |
308 |
|
Polypeptide used |
DBD |
3 |
248 |
5 |
0 |
0 |
|
Ligand sequence |
TGGTTC20NGA |
4 |
248 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AA |
5 |
248 |
0 |
0 |
2 |
|
Seed sequence |
ATAAACAANWGTAAACA |
6 |
0 |
186 |
0 |
4 |
|
Hamming distance of sequences to seed |
2 |
7 |
248 |
0 |
0 |
0 |
|
SELEX cycle |
4 |
8 |
249 |
0 |
2 |
0 |
|
Number of repeats |
dimeric |
9 |
14 |
33 |
23 |
224 |
|
Comment |
|
10 |
129 |
2 |
112 |
151 |
|
Representative matrix |
yes |
11 |
19 |
0 |
447 |
0 |
|
|
|
12 |
2 |
0 |
0 |
311 |
|
|
|
13 |
253 |
0 |
0 |
0 |
|
|
|
14 |
253 |
0 |
0 |
0 |
|
|
|
15 |
253 |
0 |
0 |
0 |
|
Source: |
|
16 |
0 |
196 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
262 |
1 |
0 |
1 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXG1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXG1 |
1 |
428 |
65 |
351 |
42 |
|
TF group |
forkhead |
2 |
22 |
433 |
4 |
107 |
|
Polypeptide used |
DBD |
3 |
17 |
0 |
1347 |
14 |
|
Ligand sequence |
TGGTTC20NGA |
4 |
10 |
0 |
1342 |
0 |
|
Batch of SELEX experiment |
AA |
5 |
683 |
8 |
10 |
0 |
|
Seed sequence |
RCGGACACAATR |
6 |
0 |
463 |
0 |
11 |
|
Hamming distance of sequences to seed |
2 |
7 |
691 |
4 |
3 |
0 |
|
SELEX cycle |
4 |
8 |
2 |
460 |
7 |
5 |
|
Number of repeats |
putatively multimeric |
9 |
702 |
13 |
14 |
3 |
|
Comment |
|
10 |
687 |
0 |
7 |
11 |
|
Representative matrix |
no |
11 |
10 |
0 |
37 |
872 |
|
Source: |
|
12 |
359 |
11 |
608 |
103 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxg1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxg1 |
1 |
2936 |
26 |
529 |
7 |
|
TF group |
forkhead |
2 |
0 |
91 |
7 |
4689 |
|
Polypeptide used |
DBD |
3 |
2975 |
0 |
0 |
0 |
|
Ligand sequence |
TATCTG20NTCG |
4 |
2966 |
0 |
7 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
2851 |
0 |
0 |
7 |
|
Seed sequence |
ATAAACAAGTRTAAACA |
6 |
4 |
4104 |
0 |
59 |
|
Hamming distance of sequences to seed |
2 |
7 |
2968 |
0 |
0 |
0 |
|
SELEX cycle |
4 |
8 |
2992 |
0 |
0 |
924 |
|
Number of repeats |
dimeric |
9 |
2114 |
1276 |
3783 |
92 |
|
Comment |
|
10 |
182 |
161 |
132 |
4627 |
|
Representative matrix |
yes |
11 |
639 |
0 |
3925 |
0 |
|
|
|
12 |
0 |
6 |
0 |
4633 |
|
|
|
13 |
3065 |
1673 |
0 |
0 |
|
|
|
14 |
3124 |
0 |
0 |
0 |
|
|
|
15 |
3131 |
6 |
0 |
0 |
|
Source: |
|
16 |
0 |
4194 |
0 |
73 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
3063 |
6 |
6 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
Foxg1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxg1 |
1 |
54 |
119 |
20 |
5 |
|
TF group |
forkhead |
2 |
51 |
124 |
8 |
45 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
275 |
2 |
|
Ligand sequence |
TATCTG20NTCG |
4 |
0 |
1 |
280 |
3 |
|
Batch of SELEX experiment |
AF |
5 |
147 |
0 |
0 |
13 |
|
Seed sequence |
NMGGACACAATC |
6 |
9 |
220 |
2 |
7 |
|
Hamming distance of sequences to seed |
2 |
7 |
154 |
7 |
2 |
0 |
|
SELEX cycle |
4 |
8 |
0 |
219 |
0 |
3 |
|
Number of repeats |
putatively multimeric |
9 |
154 |
12 |
9 |
7 |
|
Comment |
|
10 |
138 |
23 |
14 |
5 |
|
Representative matrix |
yes |
11 |
12 |
6 |
17 |
241 |
|
Source: |
|
12 |
6 |
176 |
15 |
48 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxg1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxg1 |
1 |
1590 |
0 |
5613 |
16 |
|
TF group |
forkhead |
2 |
445 |
357 |
137 |
7203 |
|
Polypeptide used |
DBD |
3 |
7203 |
816 |
0 |
0 |
|
Ligand sequence |
TATCTG20NTCG |
4 |
7203 |
57 |
5 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
7203 |
0 |
0 |
0 |
|
Seed sequence |
RTAAAYA |
6 |
60 |
5987 |
30 |
1216 |
|
Hamming distance of sequences to seed |
1 |
7 |
7203 |
0 |
32 |
0 |
|
SELEX cycle |
4 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |