|
FOXC2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXC2 |
1 |
3469 |
1989 |
2267 |
4388 |
|
TF group |
forkhead |
2 |
3633 |
859 |
8334 |
243 |
|
Polypeptide used |
DBD |
3 |
3037 |
1910 |
662 |
11006 |
|
Ligand sequence |
TGAGTG30NTGA |
4 |
5680 |
5078 |
247 |
2302 |
|
Batch of SELEX experiment |
AI |
5 |
9003 |
197 |
161 |
266 |
|
Seed sequence |
NRTMAATATTKAYN |
6 |
8956 |
232 |
235 |
682 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
2984 |
73 |
13081 |
|
SELEX cycle |
3 |
8 |
8700 |
45 |
1655 |
21 |
|
Number of repeats |
dimeric |
9 |
1230 |
208 |
477 |
13586 |
|
Comment |
|
10 |
633 |
285 |
349 |
13787 |
|
Representative
matrix |
no |
11 |
1264 |
242 |
7656 |
6255 |
|
|
|
12 |
8469 |
519 |
1169 |
2184 |
|
Source: |
|
13 |
327 |
9606 |
837 |
4011 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
4776 |
1701 |
1916 |
3115 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXC2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXC2 |
1 |
5819 |
1413 |
7070 |
1727 |
|
TF group |
forkhead |
2 |
2704 |
1991 |
207 |
12889 |
|
Polypeptide used |
DBD |
3 |
12889 |
1385 |
147 |
127 |
|
Ligand sequence |
TGAGTG30NTGA |
4 |
12889 |
471 |
258 |
272 |
|
Batch of SELEX experiment |
AI |
5 |
12889 |
47 |
892 |
78 |
|
Seed sequence |
RTAAAYAAACA |
6 |
83 |
4849 |
24 |
8040 |
|
Hamming distance of sequences to seed |
1 |
7 |
12889 |
184 |
46 |
38 |
|
SELEX cycle |
3 |
8 |
12889 |
218 |
120 |
324 |
|
Number of repeats |
dimeric |
9 |
12889 |
195 |
398 |
888 |
|
Comment |
|
10 |
1180 |
12889 |
609 |
3364 |
|
Representative matrix |
no |
11 |
12889 |
590 |
740 |
777 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXC2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXC2 |
1 |
8939 |
1279 |
454 |
11517 |
|
TF group |
forkhead |
2 |
20456 |
1652 |
5093 |
2080 |
|
Polypeptide used |
DBD |
3 |
11301 |
3476 |
3129 |
9155 |
|
Ligand sequence |
TGAGTG30NTGA |
4 |
6418 |
440 |
14038 |
136 |
|
Batch of SELEX experiment |
AI |
5 |
2005 |
3773 |
321 |
20456 |
|
Seed sequence |
WAWRTAAAYAWW |
6 |
20456 |
6759 |
87 |
122 |
|
Hamming distance of sequences to seed |
1 |
7 |
20456 |
344 |
81 |
107 |
|
SELEX cycle |
3 |
8 |
20456 |
105 |
279 |
242 |
|
Number of repeats |
monomeric |
9 |
31 |
14435 |
68 |
6021 |
|
Comment |
|
10 |
20456 |
101 |
328 |
215 |
|
Representative
matrix |
no |
11 |
13296 |
2087 |
1710 |
7160 |
|
|
|
12 |
10995 |
3080 |
2649 |
9461 |
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |