|
FOXC1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXC1 |
1 |
2886 |
190 |
622 |
231 |
|
TF group |
forkhead |
2 |
1657 |
317 |
248 |
663 |
|
Polypeptide used |
DBD |
3 |
1306 |
98 |
1580 |
205 |
|
Ligand sequence |
TGAGGC30NGGA |
4 |
752 |
324 |
35 |
2886 |
|
Batch of SELEX experiment |
AI |
5 |
2886 |
324 |
25 |
7 |
|
Seed sequence |
ANRTAAAYAAACA |
6 |
2886 |
53 |
32 |
57 |
|
Hamming distance of sequences to seed |
1 |
7 |
2886 |
8 |
110 |
7 |
|
SELEX cycle |
3 |
8 |
12 |
1057 |
8 |
1829 |
|
Number of repeats |
dimeric |
9 |
2886 |
38 |
9 |
0 |
|
Comment |
|
10 |
2886 |
53 |
52 |
57 |
|
Representative matrix |
no |
11 |
2886 |
82 |
107 |
184 |
|
|
|
12 |
498 |
2886 |
204 |
969 |
|
Source: |
|
13 |
2886 |
156 |
220 |
142 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
FOXC1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXC1 |
1 |
5830 |
2784 |
3525 |
6645 |
|
TF group |
forkhead |
2 |
5978 |
1208 |
12734 |
218 |
|
Polypeptide used |
DBD |
3 |
4832 |
2830 |
867 |
15996 |
|
Ligand sequence |
TGAGGC30NGGA |
4 |
9518 |
7470 |
54 |
3153 |
|
Batch of SELEX experiment |
AI |
5 |
14437 |
115 |
118 |
103 |
|
Seed sequence |
NRTMAATATTKAYN |
6 |
14440 |
99 |
142 |
132 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
1791 |
48 |
20151 |
|
SELEX cycle |
3 |
8 |
14082 |
74 |
1275 |
11 |
|
Number of repeats |
dimeric |
9 |
326 |
110 |
154 |
20638 |
|
Comment |
|
10 |
200 |
102 |
230 |
20680 |
|
Representative matrix |
yes |
11 |
1808 |
44 |
11094 |
10283 |
|
|
|
12 |
13352 |
480 |
1774 |
3719 |
|
Source: |
|
13 |
294 |
14403 |
1460 |
6878 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
7841 |
2384 |
2791 |
4932 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXC1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXC1 |
1 |
6452 |
772 |
304 |
12038 |
|
TF group |
forkhead |
2 |
14324 |
728 |
4165 |
1386 |
|
Polypeptide used |
DBD |
3 |
7893 |
2008 |
2422 |
10596 |
|
Ligand sequence |
TGAGGC30NGGA |
4 |
4858 |
336 |
13631 |
51 |
|
Batch of SELEX experiment |
AI |
5 |
2496 |
1652 |
390 |
18489 |
|
Seed sequence |
WRWRTMAAYAW |
6 |
13117 |
5372 |
21 |
45 |
|
Hamming distance of sequences to seed |
1 |
7 |
18489 |
108 |
0 |
57 |
|
SELEX cycle |
3 |
8 |
18489 |
56 |
141 |
112 |
|
Number of repeats |
monomeric |
9 |
122 |
8782 |
165 |
9708 |
|
Comment |
|
10 |
18489 |
27 |
433 |
184 |
|
Representative
matrix |
no |
11 |
6702 |
1558 |
1107 |
11787 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxc1_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxc1 |
1 |
738 |
61 |
1592 |
51 |
|
TF group |
forkhead |
2 |
184 |
165 |
30 |
1496 |
|
Polypeptide used |
DBD |
3 |
1232 |
141 |
7 |
19 |
|
Ligand sequence |
CCCCT14N |
4 |
1268 |
30 |
6 |
13 |
|
Batch of SELEX experiment |
T |
5 |
1312 |
1 |
25 |
0 |
|
Seed sequence |
GTAAAYAAACA |
6 |
3 |
628 |
1 |
881 |
|
Hamming distance of sequences to seed |
2 |
7 |
1301 |
2 |
1 |
3 |
|
SELEX cycle |
4 |
8 |
1303 |
0 |
0 |
2 |
|
Number of repeats |
dimeric |
9 |
1319 |
25 |
26 |
19 |
|
Comment |
|
10 |
42 |
1337 |
15 |
220 |
|
Representative matrix |
yes |
11 |
1328 |
30 |
40 |
7 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxc1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxc1 |
1 |
601 |
15 |
389 |
0 |
|
TF group |
forkhead |
2 |
46 |
150 |
0 |
990 |
|
Polypeptide used |
DBD |
3 |
990 |
195 |
26 |
5 |
|
Ligand sequence |
CCCCT14N |
4 |
990 |
21 |
41 |
38 |
|
Batch of SELEX experiment |
T |
5 |
990 |
6 |
0 |
18 |
|
Seed sequence |
RTAAAYA |
6 |
7 |
765 |
0 |
224 |
|
Hamming distance of sequences to seed |
1 |
7 |
990 |
0 |
6 |
0 |
|
SELEX cycle |
4 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |