ESRRG_d1

 

 

 

 

A

C

G

T

 

Name

ESRRG

1

2868

50

268

55

 

TF group

nuclearreceptor

2

3068

50

72

4

 

Polypeptide used

full

3

24

0

3528

148

 

Ligand sequence

TGACGA20NGCA

4

6

0

3561

8

 

Batch of SELEX experiment

AF

5

195

11

285

2897

 

Seed sequence

AAGGTCANNNNAAGGTCA

6

16

3057

91

630

 

Hamming distance of sequences to seed

2

7

2867

12

779

19

 

SELEX cycle

4

8

578

796

363

1446

 

Number of repeats

dimeric

9

549

695

654

1340

 

Comment

 

10

105

700

223

2215

 

Representative matrix

no

11

453

1597

1242

188

 

 

 

12

2648

6

683

81

 

 

 

13

3134

92

40

0

 

 

 

14

31

2

3413

68

 

 

 

15

0

3

3614

4

 

 

 

16

163

3

360

2784

 

Source:

 

17

9

3429

50

286

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

2960

33

445

11

 

 

 

 

 

 

 

 

 

 

 

 

ESRRG_d2

 

 

 

 

A

C

G

T

 

Name

ESRRG

1

1701

1

165

46

 

TF group

nuclearreceptor

2

1897

0

55

4

 

Polypeptide used

full

3

2

0

2190

82

 

Ligand sequence

TGACGA20NGCA

4

10

0

2179

18

 

Batch of SELEX experiment

AF

5

47

4

209

1848

 

Seed sequence

RAGGTCANTCAAGGTCA

6

1

2010

66

200

 

Hamming distance of sequences to seed

2

7

1902

3

132

5

 

SELEX cycle

4

8

425

462

659

406

 

Number of repeats

dimeric

9

571

898

106

1139

 

Comment

 

10

92

2105

315

96

 

Representative matrix

no

11

1876

2

3

15

 

 

 

12

1889

8

1

0

 

 

 

13

5

3

2129

38

 

 

 

14

2

0

2191

1

 

 

 

15

154

2

67

1806

 

Source:

 

16

0

2110

44

208

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

1740

0

261

7

 

 

 

 

 

 

 

 

 

 

 

 

ESRRG_m1

 

 

 

 

A

C

G

T

 

Name

ESRRG

1

3489

5974

2800

14909

 

TF group

nuclearreceptor

2

705

10009

4901

490

 

Polypeptide used

full

3

14909

0

603

195

 

Ligand sequence

TGACGA20NGCA

4

14909

12

34

5

 

Batch of SELEX experiment

AF

5

12

7

14909

298

 

Seed sequence

TSAAGGTCAN

6

0

17

14909

14

 

Hamming distance of sequences to seed

1

7

472

41

844

14909

 

SELEX cycle

4

8

7

14909

271

1280

 

Number of repeats

monomeric

9

14909

34

1561

60

 

Comment

 

10

4305

3207

1181

6216

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764