|
EN2_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EN2 |
1 |
189 |
173 |
97 |
204 |
|
TF group |
homeodomain |
2 |
95 |
243 |
137 |
189 |
|
Polypeptide used |
DBD |
3 |
0 |
334 |
0 |
329 |
|
Ligand sequence |
TTGAGG20NGA |
4 |
663 |
10 |
60 |
18 |
|
Batch of SELEX experiment |
R |
5 |
663 |
0 |
0 |
0 |
|
Seed sequence |
NNYAATTANN |
6 |
0 |
3 |
0 |
663 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
90 |
19 |
663 |
|
SELEX cycle |
3 |
8 |
663 |
0 |
11 |
62 |
|
Number of repeats |
monomeric |
9 |
231 |
154 |
142 |
136 |
|
Comment |
|
10 |
130 |
259 |
139 |
136 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
EN2_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EN2 |
1 |
402 |
564 |
456 |
225 |
|
TF group |
homeodomain |
2 |
212 |
681 |
412 |
343 |
|
Polypeptide used |
full |
3 |
10 |
1024 |
35 |
624 |
|
Ligand sequence |
TGCCAT20NGA |
4 |
1648 |
297 |
164 |
53 |
|
Batch of SELEX experiment |
AE |
5 |
1648 |
105 |
7 |
0 |
|
Seed sequence |
NNYAATTANN |
6 |
0 |
0 |
0 |
1648 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
420 |
203 |
1648 |
|
SELEX cycle |
3 |
8 |
1648 |
0 |
45 |
0 |
|
Number of repeats |
monomeric |
9 |
350 |
491 |
630 |
177 |
|
Comment |
|
10 |
181 |
708 |
476 |
283 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
En2_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
En2 |
1 |
66 |
98 |
112 |
54 |
|
TF group |
homeodomain |
2 |
32 |
152 |
115 |
32 |
|
Polypeptide used |
DBD |
3 |
0 |
66 |
0 |
264 |
|
Ligand sequence |
TCAGCT20NCG |
4 |
330 |
74 |
19 |
0 |
|
Batch of SELEX experiment |
Z |
5 |
330 |
0 |
10 |
0 |
|
Seed sequence |
NNYAATTANN |
6 |
4 |
0 |
0 |
330 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
16 |
35 |
330 |
|
SELEX cycle |
4 |
8 |
330 |
0 |
0 |
0 |
|
Number of repeats |
monomeric |
9 |
78 |
65 |
148 |
40 |
|
Comment |
|
10 |
28 |
123 |
89 |
90 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |