|
ELF5_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ELF5 |
1 |
2919 |
163 |
266 |
869 |
|
TF group |
ETS |
2 |
1205 |
2633 |
1020 |
899 |
|
Polypeptide used |
DBD |
3 |
1075 |
2652 |
1508 |
79 |
|
Ligand sequence |
TGCCGC20NCG |
4 |
1578 |
2841 |
186 |
37 |
|
Batch of SELEX experiment |
V |
5 |
0 |
0 |
3755 |
23 |
|
Seed sequence |
ACCCGGAAGTN |
6 |
0 |
0 |
3788 |
20 |
|
Hamming distance of sequences to seed |
2 |
7 |
3400 |
0 |
0 |
0 |
|
SELEX cycle |
2 |
8 |
3363 |
3 |
0 |
237 |
|
Number of repeats |
monomeric |
9 |
719 |
116 |
3437 |
23 |
|
Comment |
|
10 |
346 |
649 |
241 |
3116 |
|
Representative
matrix |
no |
11 |
1143 |
444 |
972 |
724 |
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ELF5_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ELF5 |
1 |
2416 |
252 |
301 |
793 |
|
TF group |
ETS |
2 |
1221 |
2298 |
955 |
866 |
|
Polypeptide used |
full |
3 |
987 |
2453 |
1266 |
97 |
|
Ligand sequence |
TCTCGG20NGA |
4 |
1458 |
2528 |
309 |
56 |
|
Batch of SELEX experiment |
AF |
5 |
3 |
0 |
3307 |
20 |
|
Seed sequence |
ACCCGGAAGTN |
6 |
5 |
0 |
3315 |
25 |
|
Hamming distance of sequences to seed |
2 |
7 |
2699 |
11 |
1 |
4 |
|
SELEX cycle |
2 |
8 |
2646 |
61 |
0 |
245 |
|
Number of repeats |
monomeric |
9 |
890 |
155 |
2857 |
84 |
|
Comment |
|
10 |
477 |
716 |
312 |
2470 |
|
Representative matrix |
no |
11 |
959 |
371 |
762 |
663 |
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Elf5_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Elf5 |
1 |
1020 |
113 |
161 |
381 |
|
TF group |
ETS |
2 |
501 |
960 |
450 |
462 |
|
Polypeptide used |
DBD |
3 |
446 |
1093 |
562 |
48 |
|
Ligand sequence |
TATTGT20NCG |
4 |
620 |
1086 |
154 |
26 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
0 |
1346 |
0 |
|
Seed sequence |
ACCCGGAAGTN |
6 |
0 |
1 |
1344 |
1 |
|
Hamming distance of sequences to seed |
2 |
7 |
1180 |
7 |
0 |
12 |
|
SELEX cycle |
2 |
8 |
1152 |
27 |
8 |
128 |
|
Number of repeats |
monomeric |
9 |
448 |
123 |
1164 |
23 |
|
Comment |
|
10 |
226 |
345 |
161 |
1035 |
|
Representative
matrix |
no |
11 |
402 |
179 |
319 |
275 |
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |