|
E2F3_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
E2F3 |
1 |
14836 |
2518 |
4831 |
2338 |
|
TF group |
E2F |
2 |
19063 |
374 |
3719 |
450 |
|
Polypeptide used |
DBD |
3 |
21577 |
44 |
75 |
1831 |
|
Ligand sequence |
TTACAT20NACA |
4 |
22031 |
43 |
53 |
3968 |
|
Batch of SELEX experiment |
AF |
5 |
20106 |
30 |
854 |
5368 |
|
Seed sequence |
NNAAATGGCGCCAAAANN |
6 |
4901 |
63 |
10400 |
21178 |
|
Hamming distance of sequences to seed |
2 |
7 |
501 |
5049 |
34974 |
1726 |
|
SELEX cycle |
4 |
8 |
5 |
11 |
35721 |
0 |
|
Number of repeats |
dimeric |
9 |
10 |
24105 |
0 |
15 |
|
Comment |
|
10 |
21 |
18 |
36551 |
6 |
|
Representative matrix |
yes |
11 |
7 |
23427 |
0 |
0 |
|
|
|
12 |
10 |
23428 |
406 |
21 |
|
|
|
13 |
21554 |
282 |
0 |
239 |
|
|
|
14 |
21631 |
23 |
51 |
848 |
|
|
|
15 |
21677 |
9 |
24 |
968 |
|
|
|
16 |
20878 |
56 |
47 |
2485 |
|
Source: |
|
17 |
6227 |
6249 |
3615 |
9645 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
3794 |
5728 |
9709 |
8492 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
E2F3_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
E2F3 |
1 |
1369 |
284 |
588 |
399 |
|
TF group |
E2F |
2 |
1917 |
46 |
565 |
36 |
|
Polypeptide used |
DBD |
3 |
2202 |
0 |
13 |
234 |
|
Ligand sequence |
TTACAT20NACA |
4 |
2309 |
0 |
0 |
184 |
|
Batch of SELEX experiment |
AF |
5 |
2207 |
0 |
46 |
466 |
|
Seed sequence |
NNAAATGGCGCCATTTNN |
6 |
740 |
0 |
1453 |
1985 |
|
Hamming distance of sequences to seed |
2 |
7 |
53 |
520 |
3761 |
129 |
|
SELEX cycle |
4 |
8 |
0 |
3 |
3871 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
2490 |
0 |
0 |
|
Comment |
|
10 |
0 |
3 |
3985 |
0 |
|
Representative matrix |
no |
11 |
0 |
2429 |
0 |
0 |
|
|
|
12 |
97 |
2411 |
550 |
36 |
|
|
|
13 |
2024 |
653 |
0 |
433 |
|
|
|
14 |
1399 |
30 |
22 |
2424 |
|
|
|
15 |
1093 |
10 |
12 |
2921 |
|
|
|
16 |
437 |
24 |
14 |
2843 |
|
Source: |
|
17 |
74 |
429 |
127 |
2269 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
287 |
712 |
355 |
1504 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
E2F3_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
E2F3 |
1 |
9083 |
2961 |
2697 |
4019 |
|
TF group |
E2F |
2 |
6970 |
562 |
6888 |
6095 |
|
Polypeptide used |
DBD |
3 |
3583 |
37 |
40 |
18143 |
|
Ligand sequence |
TTACAT20NACA |
4 |
1913 |
9 |
58 |
20773 |
|
Batch of SELEX experiment |
AF |
5 |
1201 |
53 |
29 |
20312 |
|
Seed sequence |
NNTTTTGGCGCCAAAANN |
6 |
703 |
9 |
846 |
20066 |
|
Hamming distance of sequences to seed |
2 |
7 |
32 |
599 |
26704 |
9 |
|
SELEX cycle |
4 |
8 |
10 |
13 |
27166 |
0 |
|
Number of repeats |
dimeric |
9 |
5 |
17838 |
4 |
22 |
|
Comment |
|
10 |
22 |
13 |
27719 |
0 |
|
Representative
matrix |
no |
11 |
5 |
17302 |
0 |
3 |
|
|
|
12 |
7 |
17328 |
419 |
17 |
|
|
|
13 |
16092 |
235 |
25 |
245 |
|
|
|
14 |
15996 |
26 |
44 |
435 |
|
|
|
15 |
16259 |
15 |
49 |
295 |
|
|
|
16 |
15741 |
32 |
26 |
1249 |
|
Source: |
|
17 |
2054 |
10159 |
2570 |
4716 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
3685 |
4260 |
1811 |
9959 |
|
|
|