|
E2F2_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
E2F2 |
1 |
121 |
23 |
18 |
17 |
|
TF group |
E2F |
2 |
137 |
1 |
22 |
7 |
|
Polypeptide used |
DBD |
3 |
144 |
0 |
0 |
13 |
|
Ligand sequence |
TACTCA20NCG |
4 |
143 |
1 |
0 |
7 |
|
Batch of SELEX experiment |
W |
5 |
140 |
2 |
9 |
16 |
|
Seed sequence |
AAAAATGGCGCCAAAANN |
6 |
43 |
0 |
22 |
159 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
5 |
229 |
6 |
|
SELEX cycle |
4 |
8 |
0 |
0 |
232 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
115 |
0 |
1 |
|
Comment |
|
10 |
0 |
0 |
235 |
0 |
|
Representative
matrix |
no |
11 |
0 |
115 |
0 |
0 |
|
|
|
12 |
0 |
115 |
0 |
0 |
|
|
|
13 |
142 |
2 |
0 |
1 |
|
|
|
14 |
145 |
0 |
0 |
3 |
|
|
|
15 |
143 |
1 |
0 |
9 |
|
|
|
16 |
131 |
2 |
0 |
41 |
|
Source: |
|
17 |
49 |
23 |
0 |
79 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
47 |
10 |
102 |
29 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
E2F2_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
E2F2 |
1 |
66 |
31 |
40 |
10 |
|
TF group |
E2F |
2 |
59 |
16 |
45 |
38 |
|
Polypeptide used |
DBD |
3 |
23 |
0 |
0 |
166 |
|
Ligand sequence |
TACTCA20NCG |
4 |
11 |
3 |
3 |
171 |
|
Batch of SELEX experiment |
W |
5 |
14 |
2 |
2 |
165 |
|
Seed sequence |
NNTTTTGGCGCCAAAANN |
6 |
5 |
1 |
6 |
172 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
2 |
227 |
0 |
|
SELEX cycle |
4 |
8 |
0 |
0 |
230 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
106 |
0 |
0 |
|
Comment |
|
10 |
0 |
0 |
234 |
0 |
|
Representative matrix |
no |
11 |
0 |
105 |
0 |
0 |
|
|
|
12 |
0 |
105 |
3 |
1 |
|
|
|
13 |
135 |
4 |
2 |
2 |
|
|
|
14 |
136 |
2 |
0 |
4 |
|
|
|
15 |
133 |
1 |
0 |
8 |
|
|
|
16 |
133 |
1 |
2 |
9 |
|
Source: |
|
17 |
41 |
25 |
7 |
75 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
35 |
31 |
75 |
22 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
E2F2_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
E2F2 |
1 |
40 |
0 |
0 |
3 |
|
TF group |
E2F |
2 |
41 |
0 |
0 |
2 |
|
Polypeptide used |
DBD |
3 |
41 |
0 |
0 |
1 |
|
Ligand sequence |
TACTCA20NCG |
4 |
34 |
1 |
3 |
13 |
|
Batch of SELEX experiment |
W |
5 |
17 |
1 |
8 |
46 |
|
Seed sequence |
AAAATGGCGCCATTTT |
6 |
0 |
6 |
68 |
2 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
0 |
68 |
0 |
|
SELEX cycle |
4 |
8 |
0 |
31 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
0 |
70 |
0 |
|
Comment |
< 100 counts |
10 |
0 |
31 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
31 |
3 |
0 |
|
|
|
12 |
36 |
3 |
0 |
8 |
|
|
|
13 |
19 |
1 |
0 |
42 |
|
|
|
14 |
9 |
0 |
0 |
51 |
|
Source: |
|
15 |
1 |
0 |
0 |
52 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
9 |
3 |
1 |
37 |
|
|
|