DBP_1

 

 

 

 

A

C

G

T

 

Name

DBP

1

3456

5864

4258

5076

 

TF group

bZIP

2

10802

3242

7851

131

 

Polypeptide used

DBD

3

13

16

2

18653

 

Ligand sequence

TAACTT20NCG

4

21

18

1293

18653

 

Batch of SELEX experiment

W

5

18653

10

907

0

 

Seed sequence

NRTTACGTAAYN

6

8

18653

0

2078

 

Hamming distance of sequences to seed

1

7

4761

46

18653

10

 

SELEX cycle

2

8

0

1794

2

18653

 

Number of repeats

dimeric

9

18653

1038

8

11

 

Comment

 

10

18653

6

0

15

 

Representative matrix

no

11

139

11397

1632

7257

 

Source:

 

12

6769

5933

3237

2715

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

DBP_2

 

 

 

 

A

C

G

T

 

Name

DBP

1

1552

1714

1903

1930

 

TF group

bZIP

2

3706

1130

3393

93

 

Polypeptide used

full

3

5

4

2

7100

 

Ligand sequence

TGCGGG20NGGC

4

4

6

602

7100

 

Batch of SELEX experiment

AE

5

7100

0

498

4

 

Seed sequence

NRTTACGTAAYN

6

2

7100

21

2664

 

Hamming distance of sequences to seed

1

7

3180

17

7100

1

 

SELEX cycle

2

8

3

541

7

7100

 

Number of repeats

dimeric

9

7100

288

7

6

 

Comment

 

10

7100

1

2

2

 

Representative matrix

no

11

158

3707

1543

3393

 

Source:

 

12

2574

1657

1747

1122

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Dbp_3

 

 

 

 

A

C

G

T

 

Name

Dbp

1

1399

2495

1802

2787

 

TF group

bZIP

2

5052

1053

3431

24

 

Polypeptide used

DBD

3

2

6

2

8483

 

Ligand sequence

TAAATG20NCG

4

9

10

248

8483

 

Batch of SELEX experiment

Z

5

8483

4

157

0

 

Seed sequence

NRTTACGTAAYN

6

5

8483

4

785

 

Hamming distance of sequences to seed

1

7

1779

11

8483

4

 

SELEX cycle

2

8

2

373

1

8483

 

Number of repeats

dimeric

9

8483

204

2

4

 

Comment

 

10

8483

0

1

3

 

Representative matrix

no

11

27

4917

524

3565

 

Source:

 

12

3312

2770

1236

1165

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764