|
DBP_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
DBP |
1 |
3456 |
5864 |
4258 |
5076 |
|
TF group |
bZIP |
2 |
10802 |
3242 |
7851 |
131 |
|
Polypeptide used |
DBD |
3 |
13 |
16 |
2 |
18653 |
|
Ligand sequence |
TAACTT20NCG |
4 |
21 |
18 |
1293 |
18653 |
|
Batch of SELEX experiment |
W |
5 |
18653 |
10 |
907 |
0 |
|
Seed sequence |
NRTTACGTAAYN |
6 |
8 |
18653 |
0 |
2078 |
|
Hamming distance of sequences to seed |
1 |
7 |
4761 |
46 |
18653 |
10 |
|
SELEX cycle |
2 |
8 |
0 |
1794 |
2 |
18653 |
|
Number of repeats |
dimeric |
9 |
18653 |
1038 |
8 |
11 |
|
Comment |
|
10 |
18653 |
6 |
0 |
15 |
|
Representative
matrix |
no |
11 |
139 |
11397 |
1632 |
7257 |
|
Source: |
|
12 |
6769 |
5933 |
3237 |
2715 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
DBP_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
DBP |
1 |
1552 |
1714 |
1903 |
1930 |
|
TF group |
bZIP |
2 |
3706 |
1130 |
3393 |
93 |
|
Polypeptide used |
full |
3 |
5 |
4 |
2 |
7100 |
|
Ligand sequence |
TGCGGG20NGGC |
4 |
4 |
6 |
602 |
7100 |
|
Batch of SELEX experiment |
AE |
5 |
7100 |
0 |
498 |
4 |
|
Seed sequence |
NRTTACGTAAYN |
6 |
2 |
7100 |
21 |
2664 |
|
Hamming distance of sequences to seed |
1 |
7 |
3180 |
17 |
7100 |
1 |
|
SELEX cycle |
2 |
8 |
3 |
541 |
7 |
7100 |
|
Number of repeats |
dimeric |
9 |
7100 |
288 |
7 |
6 |
|
Comment |
|
10 |
7100 |
1 |
2 |
2 |
|
Representative matrix |
no |
11 |
158 |
3707 |
1543 |
3393 |
|
Source: |
|
12 |
2574 |
1657 |
1747 |
1122 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Dbp_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Dbp |
1 |
1399 |
2495 |
1802 |
2787 |
|
TF group |
bZIP |
2 |
5052 |
1053 |
3431 |
24 |
|
Polypeptide used |
DBD |
3 |
2 |
6 |
2 |
8483 |
|
Ligand sequence |
TAAATG20NCG |
4 |
9 |
10 |
248 |
8483 |
|
Batch of SELEX experiment |
Z |
5 |
8483 |
4 |
157 |
0 |
|
Seed sequence |
NRTTACGTAAYN |
6 |
5 |
8483 |
4 |
785 |
|
Hamming distance of sequences to seed |
1 |
7 |
1779 |
11 |
8483 |
4 |
|
SELEX cycle |
2 |
8 |
2 |
373 |
1 |
8483 |
|
Number of repeats |
dimeric |
9 |
8483 |
204 |
2 |
4 |
|
Comment |
|
10 |
8483 |
0 |
1 |
3 |
|
Representative
matrix |
no |
11 |
27 |
4917 |
524 |
3565 |
|
Source: |
|
12 |
3312 |
2770 |
1236 |
1165 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |