|
CREB3L1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CREB3L1 |
1 |
247 |
143 |
181 |
100 |
|
TF group |
bZIP |
2 |
38 |
159 |
29 |
671 |
|
Polypeptide used |
DBD |
3 |
20 |
3 |
671 |
18 |
|
Ligand sequence |
TAAACA20NCAA |
4 |
61 |
671 |
0 |
2 |
|
Batch of SELEX experiment |
Y |
5 |
3 |
671 |
0 |
5 |
|
Seed sequence |
NTGCCACGTCANCA |
6 |
671 |
0 |
3 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
671 |
3 |
0 |
|
SELEX cycle |
4 |
8 |
21 |
3 |
671 |
0 |
|
Number of repeats |
dimeric |
9 |
7 |
0 |
3 |
671 |
|
Comment |
|
10 |
121 |
671 |
40 |
10 |
|
Representative matrix |
no |
11 |
671 |
33 |
72 |
39 |
|
|
|
12 |
60 |
186 |
125 |
300 |
|
Source: |
|
13 |
76 |
671 |
64 |
79 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
671 |
65 |
167 |
127 |
|
|
|
|
|
|
|
|
|
|
|
|
CREB3L1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CREB3L1 |
1 |
368 |
786 |
516 |
3474 |
|
TF group |
bZIP |
2 |
231 |
131 |
3953 |
295 |
|
Polypeptide used |
DBD |
3 |
566 |
3233 |
42 |
107 |
|
Ligand sequence |
TAAACA20NCAA |
4 |
174 |
3292 |
158 |
255 |
|
Batch of SELEX experiment |
Y |
5 |
2700 |
0 |
13 |
8 |
|
Seed sequence |
TGCCACGTGGCA |
6 |
1 |
3361 |
1 |
7 |
|
Hamming distance of sequences to seed |
2 |
7 |
2 |
4 |
4275 |
1 |
|
SELEX cycle |
4 |
8 |
5 |
14 |
6 |
4119 |
|
Number of repeats |
dimeric |
9 |
297 |
202 |
3788 |
312 |
|
Comment |
|
10 |
228 |
84 |
3786 |
755 |
|
Representative matrix |
yes |
11 |
340 |
3358 |
143 |
343 |
|
Source: |
|
12 |
2367 |
531 |
785 |
428 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
CREB3L1_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CREB3L1 |
1 |
10 |
23 |
28 |
228 |
|
TF group |
bZIP |
2 |
9 |
5 |
309 |
14 |
|
Polypeptide used |
full |
3 |
11 |
119 |
1 |
1 |
|
Ligand sequence |
TAGAGT20NCG |
4 |
7 |
124 |
2 |
2 |
|
Batch of SELEX experiment |
AD |
5 |
202 |
1 |
1 |
0 |
|
Seed sequence |
TGCCACGTGGCA |
6 |
1 |
128 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
0 |
283 |
0 |
|
SELEX cycle |
4 |
8 |
1 |
0 |
0 |
267 |
|
Number of repeats |
dimeric |
9 |
10 |
2 |
263 |
16 |
|
Comment |
|
10 |
8 |
2 |
263 |
28 |
|
Representative matrix |
no |
11 |
5 |
128 |
2 |
5 |
|
Source: |
|
12 |
162 |
8 |
27 |
11 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
CREB3L1_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CREB3L1 |
1 |
21 |
13 |
20 |
12 |
|
TF group |
bZIP |
2 |
2 |
9 |
1 |
65 |
|
Polypeptide used |
full |
3 |
0 |
0 |
65 |
0 |
|
Ligand sequence |
TAGAGT20NCG |
4 |
1 |
65 |
0 |
0 |
|
Batch of SELEX experiment |
AD |
5 |
0 |
65 |
0 |
0 |
|
Seed sequence |
NTGCCACGTCANCA |
6 |
65 |
0 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
65 |
0 |
0 |
|
SELEX cycle |
4 |
8 |
0 |
0 |
65 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
0 |
0 |
65 |
|
Comment |
< 100 counts |
10 |
4 |
65 |
1 |
0 |
|
Representative
matrix |
no |
11 |
65 |
2 |
5 |
2 |
|
|
|
12 |
3 |
24 |
12 |
27 |
|
Source: |
|
13 |
3 |
65 |
1 |
3 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
65 |
5 |
6 |
2 |
|
|
|