|
CEBPB_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CEBPB |
1 |
10585 |
5007 |
6282 |
859 |
|
TF group |
bZIP |
2 |
33 |
34 |
8 |
22732 |
|
Polypeptide used |
DBD |
3 |
17 |
14 |
2276 |
22732 |
|
Ligand sequence |
TGGACA20NGA |
4 |
10930 |
34 |
11803 |
2237 |
|
Batch of SELEX experiment |
W |
5 |
393 |
22732 |
221 |
2217 |
|
Seed sequence |
NTTRCGCAAY |
6 |
3521 |
555 |
22732 |
486 |
|
Hamming distance of sequences to seed |
1 |
7 |
2527 |
22732 |
3 |
2135 |
|
SELEX cycle |
2 |
8 |
22732 |
636 |
9 |
0 |
|
Number of repeats |
dimeric |
9 |
22732 |
9 |
0 |
9 |
|
Comment |
|
10 |
155 |
10617 |
940 |
12116 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
CEBPB_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CEBPB |
1 |
1736 |
543 |
843 |
87 |
|
TF group |
bZIP |
2 |
0 |
1 |
0 |
3209 |
|
Polypeptide used |
full |
3 |
14 |
0 |
309 |
3209 |
|
Ligand sequence |
TCAACC20NCAA |
4 |
1565 |
0 |
1644 |
190 |
|
Batch of SELEX experiment |
W |
5 |
129 |
3209 |
16 |
352 |
|
Seed sequence |
NTTRCGCAAY |
6 |
393 |
33 |
3209 |
60 |
|
Hamming distance of sequences to seed |
1 |
7 |
492 |
3209 |
4 |
397 |
|
SELEX cycle |
4 |
8 |
3209 |
31 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
3209 |
0 |
4 |
0 |
|
Comment |
|
10 |
12 |
1203 |
102 |
2006 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Cebpb_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Cebpb |
1 |
4826 |
1613 |
2490 |
208 |
|
TF group |
bZIP |
2 |
6 |
30 |
15 |
9138 |
|
Polypeptide used |
DBD |
3 |
15 |
18 |
642 |
9138 |
|
Ligand sequence |
TCCTAA20NATC |
4 |
4352 |
12 |
4786 |
629 |
|
Batch of SELEX experiment |
Z |
5 |
193 |
9138 |
52 |
910 |
|
Seed sequence |
NTTRCGCAAY |
6 |
1016 |
88 |
9138 |
125 |
|
Hamming distance of sequences to seed |
1 |
7 |
1271 |
9138 |
10 |
801 |
|
SELEX cycle |
2 |
8 |
9138 |
82 |
13 |
0 |
|
Number of repeats |
dimeric |
9 |
9138 |
11 |
12 |
16 |
|
Comment |
|
10 |
36 |
3180 |
321 |
5958 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |