CEBPB_1

 

 

 

 

A

C

G

T

 

Name

CEBPB

1

10585

5007

6282

859

 

TF group

bZIP

2

33

34

8

22732

 

Polypeptide used

DBD

3

17

14

2276

22732

 

Ligand sequence

TGGACA20NGA

4

10930

34

11803

2237

 

Batch of SELEX experiment

W

5

393

22732

221

2217

 

Seed sequence

NTTRCGCAAY

6

3521

555

22732

486

 

Hamming distance of sequences to seed

1

7

2527

22732

3

2135

 

SELEX cycle

2

8

22732

636

9

0

 

Number of repeats

dimeric

9

22732

9

0

9

 

Comment

 

10

155

10617

940

12116

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

CEBPB_2

 

 

 

 

A

C

G

T

 

Name

CEBPB

1

1736

543

843

87

 

TF group

bZIP

2

0

1

0

3209

 

Polypeptide used

full

3

14

0

309

3209

 

Ligand sequence

TCAACC20NCAA

4

1565

0

1644

190

 

Batch of SELEX experiment

W

5

129

3209

16

352

 

Seed sequence

NTTRCGCAAY

6

393

33

3209

60

 

Hamming distance of sequences to seed

1

7

492

3209

4

397

 

SELEX cycle

4

8

3209

31

0

0

 

Number of repeats

dimeric

9

3209

0

4

0

 

Comment

 

10

12

1203

102

2006

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Cebpb_3

 

 

 

 

A

C

G

T

 

Name

Cebpb

1

4826

1613

2490

208

 

TF group

bZIP

2

6

30

15

9138

 

Polypeptide used

DBD

3

15

18

642

9138

 

Ligand sequence

TCCTAA20NATC

4

4352

12

4786

629

 

Batch of SELEX experiment

Z

5

193

9138

52

910

 

Seed sequence

NTTRCGCAAY

6

1016

88

9138

125

 

Hamming distance of sequences to seed

1

7

1271

9138

10

801

 

SELEX cycle

2

8

9138

82

13

0

 

Number of repeats

dimeric

9

9138

11

12

16

 

Comment

 

10

36

3180

321

5958

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764