|
Barhl1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Barhl1 |
1 |
1478 |
1657 |
1831 |
927 |
|
TF group |
homeodomain |
2 |
1304 |
2133 |
832 |
1624 |
|
Polypeptide used |
DBD |
3 |
599 |
53 |
0 |
5893 |
|
Ligand sequence |
TCAGTC20NCG |
4 |
5893 |
0 |
9 |
901 |
|
Batch of SELEX experiment |
AC |
5 |
5893 |
0 |
45 |
6 |
|
Seed sequence |
NNTAAACGNN |
6 |
5893 |
238 |
933 |
1816 |
|
Hamming distance of sequences to seed |
1 |
7 |
444 |
5893 |
264 |
3287 |
|
SELEX cycle |
2 |
8 |
1176 |
297 |
5893 |
916 |
|
Number of repeats |
monomeric |
9 |
1367 |
1393 |
1995 |
1137 |
|
Comment |
|
10 |
939 |
1550 |
613 |
2790 |
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Barhl1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Barhl1 |
1 |
1214 |
1623 |
2123 |
1304 |
|
TF group |
homeodomain |
2 |
1127 |
2159 |
1121 |
1858 |
|
Polypeptide used |
DBD |
3 |
590 |
41 |
0 |
6265 |
|
Ligand sequence |
TCAGTC20NCG |
4 |
6265 |
0 |
53 |
181 |
|
Batch of SELEX experiment |
AC |
5 |
6265 |
0 |
39 |
3 |
|
Seed sequence |
NNTAATTGNN |
6 |
3241 |
418 |
1950 |
6265 |
|
Hamming distance of sequences to seed |
1 |
7 |
1881 |
2017 |
1937 |
6265 |
|
SELEX cycle |
2 |
8 |
1763 |
337 |
6265 |
677 |
|
Number of repeats |
monomeric |
9 |
1136 |
2053 |
1839 |
1236 |
|
Comment |
|
10 |
985 |
1760 |
1195 |
2325 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Barhl1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Barhl1 |
1 |
189 |
26 |
1 |
4146 |
|
TF group |
homeodomain |
2 |
4146 |
9 |
32 |
325 |
|
Polypeptide used |
DBD |
3 |
4146 |
3 |
32 |
7 |
|
Ligand sequence |
TCAGTC20NCG |
4 |
1996 |
76 |
475 |
2150 |
|
Batch of SELEX experiment |
AC |
5 |
451 |
1754 |
403 |
2392 |
|
Seed sequence |
TAAWYGNNNNTAAWYG |
6 |
721 |
83 |
4146 |
325 |
|
Hamming distance of sequences to seed |
1 |
7 |
639 |
1316 |
1264 |
927 |
|
SELEX cycle |
3 |
8 |
421 |
1374 |
495 |
1855 |
|
Number of repeats |
dimeric |
9 |
737 |
1316 |
1533 |
560 |
|
Comment |
|
10 |
764 |
1519 |
542 |
1320 |
|
Representative matrix |
yes |
11 |
183 |
28 |
2 |
4146 |
|
|
|
12 |
4146 |
0 |
29 |
434 |
|
|
|
13 |
4146 |
0 |
5 |
5 |
|
|
|
14 |
2151 |
60 |
495 |
1995 |
|
Source: |
|
15 |
336 |
1897 |
389 |
2249 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
847 |
102 |
4146 |
382 |
|
|
|