|
BARX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARX1 |
1 |
420 |
1863 |
245 |
735 |
|
TF group |
homeodomain |
2 |
734 |
696 |
540 |
186 |
|
Polypeptide used |
DBD |
3 |
1696 |
305 |
235 |
134 |
|
Ligand sequence |
TATTCG20NCTG |
4 |
7 |
9 |
4 |
2200 |
|
Batch of SELEX experiment |
AC |
5 |
7 |
66 |
6 |
2166 |
|
Seed sequence |
CNATTAAAWANCNATTA |
6 |
1841 |
8 |
16 |
71 |
|
Hamming distance of sequences to seed |
2 |
7 |
1720 |
115 |
148 |
416 |
|
SELEX cycle |
3 |
8 |
1668 |
194 |
165 |
572 |
|
Number of repeats |
dimeric |
9 |
885 |
67 |
102 |
1033 |
|
Comment |
|
10 |
1662 |
189 |
297 |
454 |
|
Representative matrix |
yes |
11 |
587 |
619 |
559 |
395 |
|
|
|
12 |
290 |
2124 |
259 |
293 |
|
|
|
13 |
628 |
520 |
1026 |
74 |
|
|
|
14 |
1716 |
396 |
191 |
213 |
|
|
|
15 |
4 |
4 |
0 |
2101 |
|
Source: |
|
16 |
24 |
74 |
5 |
2097 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1860 |
13 |
36 |
157 |
|
|
|
|
|
|
|
|
|
|
|
|
BARX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARX1 |
1 |
1872 |
1821 |
2236 |
877 |
|
TF group |
homeodomain |
2 |
590 |
5138 |
246 |
1667 |
|
Polypeptide used |
DBD |
3 |
3339 |
1992 |
1386 |
87 |
|
Ligand sequence |
TATTCG20NCTG |
4 |
6805 |
207 |
192 |
0 |
|
Batch of SELEX experiment |
AC |
5 |
0 |
0 |
0 |
6805 |
|
Seed sequence |
NYNATTAN |
6 |
0 |
0 |
0 |
6805 |
|
Hamming distance of sequences to seed |
1 |
7 |
6805 |
0 |
0 |
0 |
|
SELEX cycle |
3 |
8 |
1917 |
1391 |
2420 |
1077 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |