|
ALX3_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ALX3 |
1 |
6521 |
4526 |
10609 |
3720 |
|
TF group |
homeodomain |
2 |
3442 |
11997 |
4434 |
5505 |
|
Polypeptide used |
DBD |
3 |
1964 |
8742 |
766 |
16634 |
|
Ligand sequence |
TGTAAA20NAAG |
4 |
25377 |
1564 |
1074 |
1745 |
|
Batch of SELEX experiment |
Z |
5 |
25377 |
778 |
333 |
487 |
|
Seed sequence |
NNYAATTANN |
6 |
163 |
275 |
48 |
25377 |
|
Hamming distance of sequences to seed |
1 |
7 |
1108 |
1132 |
1018 |
25377 |
|
SELEX cycle |
2 |
8 |
25377 |
510 |
139 |
2046 |
|
Number of repeats |
monomeric |
9 |
8201 |
4382 |
8698 |
4095 |
|
Comment |
|
10 |
5758 |
10329 |
5294 |
3996 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ALX3_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ALX3 |
1 |
1251 |
2174 |
1062 |
3390 |
|
TF group |
homeodomain |
2 |
987 |
3402 |
1150 |
2337 |
|
Polypeptide used |
full |
3 |
794 |
3367 |
345 |
4510 |
|
Ligand sequence |
TGCAAG20NGA |
4 |
7877 |
506 |
885 |
629 |
|
Batch of SELEX experiment |
AE |
5 |
7877 |
317 |
141 |
231 |
|
Seed sequence |
NNYAATTANN |
6 |
76 |
72 |
8 |
7877 |
|
Hamming distance of sequences to seed |
1 |
7 |
697 |
729 |
239 |
7877 |
|
SELEX cycle |
2 |
8 |
7877 |
449 |
87 |
977 |
|
Number of repeats |
monomeric |
9 |
2597 |
1671 |
2205 |
1403 |
|
Comment |
|
10 |
2759 |
2446 |
1503 |
1168 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ALX3_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ALX3 |
1 |
1115 |
1347 |
610 |
1057 |
|
TF group |
homeodomain |
2 |
714 |
353 |
76 |
4128 |
|
Polypeptide used |
full |
3 |
4128 |
46 |
208 |
374 |
|
Ligand sequence |
TGCAAG20NGA |
4 |
4128 |
15 |
13 |
7 |
|
Batch of SELEX experiment |
AE |
5 |
210 |
889 |
98 |
4128 |
|
Seed sequence |
NTAATYNRATTAN |
6 |
188 |
1737 |
381 |
2391 |
|
Hamming distance of sequences to seed |
1 |
7 |
1170 |
948 |
673 |
1337 |
|
SELEX cycle |
2 |
8 |
3221 |
562 |
907 |
147 |
|
Number of repeats |
dimeric |
9 |
4128 |
168 |
340 |
124 |
|
Comment |
|
10 |
10 |
26 |
9 |
4128 |
|
Representative
matrix |
no |
11 |
631 |
365 |
49 |
4128 |
|
|
|
12 |
4128 |
98 |
181 |
446 |
|
Source: |
|
13 |
1302 |
1143 |
812 |
871 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |